A lot of things.

- Change tests directory location. - Fix Merlu CSV UTF8 encoding. - Make classes for ParasitesPeru2021.csv Parsing.
2026-03-31 19:00:19 +02:00
parent 2bf0ca34df
commit 3a6968f40f
17 changed files with 441 additions and 59 deletions
--- a/src/ecoparasite/population/PopulationParsing.java
+++ b/src/ecoparasite/population/PopulationParsing.java
@@ -0,0 +1,97 @@
+package ecoparasite.population;
+
+import ecoparasite.input.RawData;
+import ecoparasite.input.RawDataOverflow;
+
+import java.util.HashMap;
+import java.util.HashSet;
+
+public class PopulationParsing {
+
+    public static HashMap<String,Population> parseParasitesPeru(RawData peruRawData ){
+
+        HashMap<String,Population> response = new HashMap<>();
+
+        int index = 1;
+        try {
+            while(true){ // Tant que l'on ne fait pas de débordements d'entrées.
+
+                HashMap<String,String> fields = peruRawData.getEntry(index);
+
+                String espece = fields.get("Espèce");
+                System.out.println(espece);
+                String parametre = fields.get("Paramètre");
+
+                Population population = null;
+                if( response.containsKey( espece ) ){
+                    population = response.get(espece);
+                } else {
+                    population = new Population(espece);
+                    response.put(espece, population);
+                }
+
+                // Traiter le total
+                if( fields.containsKey( "Total" ) ){
+                    if( population.getTotal() == null ){
+                        population.setTotal( new PopulationArgs() );
+                    }
+                    PopulationParsing.applyValueForParasitesPeru( population.getTotal(), parametre, fields.get("Total") );
+                }
+
+                // Traiter les années.
+                for( String k:  fields.keySet() ){
+                    if( k.equals( "Total" ) || k.equals("Paramètre") || k.equals("Espèce") ) // Déjà traité. Pas des années.
+                        continue;
+
+                    Integer year = Integer.parseInt(k);
+
+                    PopulationArgs popArgsYear = null;
+                    if( !population.getPerYear().containsKey(year) ){
+                        popArgsYear = new PopulationArgs( year );
+                        population.getPerYear().put(year, popArgsYear);
+                    } else {
+                        popArgsYear = population.getPerYear().get(year);
+                    }
+
+                    PopulationParsing.applyValueForParasitesPeru( popArgsYear, parametre, fields.get(k) );
+                }
+
+                response.put( espece, population );
+                index++;
+            }
+        } catch (RawDataOverflow e){
+            // Stop.
+        }
+
+        return response;
+    }
+
+    private static void applyValueForParasitesPeru( PopulationArgs populationArgs, String column, String value ){
+        switch( column ){
+            case "N":
+                populationArgs.setNumber(Integer.parseInt(value));
+                break;
+            case "Longueur moyenne ± SD (cm)":
+                populationArgs.setLength( PopulationArgInterval.fromString( value ) );
+                break;
+            case "Poids moyen ± SD (g)":
+                populationArgs.setWidth( PopulationArgInterval.fromString( value ) );
+                break;
+            case "Prévalence (%)":
+                populationArgs.setPrevalence( PopulationArgInterval.fromString( value ) );
+                break;
+            case "IC 95%":
+                populationArgs.setIc( PopulationArgInterval.fromString( value ) );
+                break;
+            case "Intensité moyenne (étendue)":
+                populationArgs.setIntensity( Double.parseDouble( value.split( " " )[0] ) );
+                break;
+            case "Abondance moyenne":
+                populationArgs.setAbondance( Double.parseDouble( value ) );
+                break;
+            default:
+                break;
+        }
+    }
+
+}