Benjamin/ecoparasite-data-analyse
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javadoc
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Lycano
2026-03-25 15:30:59 +01:00
parent 9ee8a06dd6
commit 4902c2c492
6 changed files with 133 additions and 2 deletions
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34
Projet.iml
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@@ -7,5 +7,39 @@
</content>
<orderEntry type="inheritedJdk" />
<orderEntry type="sourceFolder" forTests="false" />
<orderEntry type="module-library" scope="TEST">
<library name="JUnit6">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/junit/jupiter/junit-jupiter/6.0.0/junit-jupiter-6.0.0.jar!/" />
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</CLASSES>
<JAVADOC />
<SOURCES />
</library>
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4
data/test.csv Normal file
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@@ -0,0 +1,4 @@
Sample_code;Station;Latitude;Longitude;Depth;d13C_raw;d13C_corr;d15N;C_N;StandardLength;TrophicLevel;Anisakis_abdominalcavity;Anisakis_Liver;Anisakis_gonads;Anisakis_stomach;NParasitesViscera;Anisakis_Muscle_Right;Anisakis_Muscle_Left;Aniskis_Muscle_total;NParasitesTotal
TRACTRA_S0575_A0439;S0575;48.8692264;-4.3976635;96.84;-20.09735065;-19.14374028;12.52361179;4.316778148;257;3.117572211;7;1;0;1;9;1;3;4;13
TRACTRA_S0575_A0440;S0575;48.8692264;-4.3976635;96.84;-20.02738845;-19.42703789;12.25444555;3.959950061;252;3.038405671;263;5;0;21;289;12;11;23;312
TRACTRA_S0575_A0441;S0575;48.8692264;-4.3976635;96.84;-19.82735569;-18.83090708;12.97020596;4.360049101;254;3.248923438;51;1;12;1;65;2;3;5;70
1 Sample_code Station Latitude Longitude Depth d13C_raw d13C_corr d15N C_N StandardLength TrophicLevel Anisakis_abdominalcavity Anisakis_Liver Anisakis_gonads Anisakis_stomach NParasitesViscera Anisakis_Muscle_Right Anisakis_Muscle_Left Aniskis_Muscle_total NParasitesTotal
2 TRACTRA_S0575_A0439 S0575 48.8692264 -4.3976635 96.84 -20.09735065 -19.14374028 12.52361179 4.316778148 257 3.117572211 7 1 0 1 9 1 3 4 13
3 TRACTRA_S0575_A0440 S0575 48.8692264 -4.3976635 96.84 -20.02738845 -19.42703789 12.25444555 3.959950061 252 3.038405671 263 5 0 21 289 12 11 23 312
4 TRACTRA_S0575_A0441 S0575 48.8692264 -4.3976635 96.84 -19.82735569 -18.83090708 12.97020596 4.360049101 254 3.248923438 51 1 12 1 65 2 3 5 70

3
src/ecoparasite/input/DataParsing.java
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@@ -4,6 +4,9 @@ import ecoparasite.poisson.Poisson;
import java.util.HashSet;
/**
* Interface définissant la fonction de Parsing des données
*/
public interface DataParsing {
public HashSet<Poisson> parse(RawData data);

43
src/ecoparasite/input/RawDataTest.java Normal file
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@@ -0,0 +1,43 @@
package ecoparasite.input;
import org.junit.jupiter.api.Test;
import static org.junit.jupiter.api.Assertions.*;
import ecoparasite.input.RawData;
import java.util.HashSet;
class RawDataTest {
@Test
void getColumnsNames() throws InputFileException {
RawData test = InputFactory.readData("test.csv");
HashSet<String> d = new HashSet<>();
for (int i = 0; i < test.getData().size(); i++){
d.add(test.getData().get(i).getFirst());
}
System.out.println(test.getColumnsNames());
System.out.println(d);
assertIterableEquals(test.getColumnsNames(),d);
}
@Test
void getDataFromColumn() throws InputFileException {
RawData test = InputFactory.readData("test.csv");
System.out.println(test.getDataFromColumn("Sample_code"));
}
@Test
void getEntry() throws InputFileException, RawDataOverflow {
RawData test = InputFactory.readData("test.csv");
System.out.println(test.getEntry(2));
}
}

15
src/ecoparasite/poisson/Mackerel.java
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@@ -10,10 +10,21 @@ import java.util.HashSet;
* Ajoute les fonctions de Parsing liés aux données collectées sur le Mackerel.
*/
public class Mackerel extends Poisson implements DataParsing {
public Mackerel(String species, Double length, Double infestation) {
super(species, length, null, infestation);
/**
* Constructeur de Mackerel
* @param length
* @param infestation
*/
public Mackerel(Double length, Double infestation) {
super("Mackerel", length, null, infestation);
}
/**
* Implémentation de la fonction parse de Dataparsing
* @param data
* @return tableau des poissons
*/
@Override
public HashSet<Poisson> parse(RawData data) {

36
src/ecoparasite/test/InputFactoryTest.java Normal file
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@@ -0,0 +1,36 @@
package ecoparasite.test;
import static ecoparasite.input.InputFactory.*;
import static org.junit.jupiter.api.Assertions.assertArrayEquals;
import ecoparasite.input.InputFactory;
import ecoparasite.input.InputFileException;
import ecoparasite.input.RawData;
import org.junit.jupiter.api.Test;
class InputFactoryTest{
@org.junit.jupiter.api.Test
void buildDataPath() {
String d = "data/Campagne/mackerel.97442.csv";
String e = "data/Campagne/merlu2018_75164.csv";
assertArrayEquals(d.toCharArray(), InputFactory.buildDataPath("Campagne/mackerel.97442.csv").toCharArray());
assertArrayEquals(e.toCharArray(), InputFactory.buildDataPath("Campagne/merlu2018_75164.csv").toCharArray());
}
@org.junit.jupiter.api.Test
void readData() throws InputFileException {
RawData test = InputFactory.readData("test.csv");
System.out.println(test.getData());
}
@org.junit.jupiter.api.Test
void testReadData() {
}
}