diff --git a/Doc/allclasses-index.html b/Doc/allclasses-index.html
index faef165..7015e39 100644
--- a/Doc/allclasses-index.html
+++ b/Doc/allclasses-index.html
@@ -1,11 +1,11 @@
-
+
All Classes and Interfaces
-
+
+
+
Permet de faire de la complétion de données.
+
+
+
Classe qui permet de stocker les coordonnées utilisées pour le positionnement sur le fichier SVG.
+
Interface définissant la fonction de Parsing des données
-
+
+
Classe abstraite qui permet de définir des éléments SVG.
+
+
Contient divers éléments utiles pour les fichiers SVG.
+
+
Exception déclenchée lorsque le format des Axes est incorrect par rapport à ce que la fonction attend.
+
Permet de manipuler les fichiers CSV, de les lire et d'en créer des objets RawData pour ces données brutes.
-
-
+
+
Est déclenché si une erreur est survenue lors de la lecture d'un fichier.
-
-
+
+
Gère une exception lorsque qu'un type de parsing n'existe pas ou bien
qu'une erreur est survenue durant le parsing d'une donnée.
-
-
-
+
+
Permet de construire une droite/ligne en SVG.
+
+
+
-
-
+
+
Classe MackerelSerra créer pour le fichier test2.csv
cette classe existe principalement pour l'évaluation
-
-
+
+
-
-
+
+
Class Définissant les méthodes statics de Nettoyage des données
-
-
+
+
Permet d'illustrer une partie d'un poisson.
-
-
+
+
Classe générique pour un individu Poisson.
-
-
+
+
Permet de gérer une population selon les années.
-
-
+
+
Classe qui permet de gérer un intervalle de données issues d'un CSV.
-
-
+
+
Permet de stocker les paramètres d'une population pour une année spécifique.
-
-
+
+
Permet de parser une population spécifique via les schémas fournis.
-
-
+
+
Permet de stocker les données brutes d'un fichier chargé CSV, avant d'être changé en Classe plus spécifique.
-
-
+
+
Est déclenché lors du dépassement d'index lors de la récupération d'une entrée d'un RawData.
+
+
+
Classe qui permet de construire les éléments présents sur le SVG.
+
+
+
+
+
+
Classe qui permet de convertir des doubles en dimension SVG.
+
+
+
+
Élement qui permet de générer un texte sur le SVG.
+
+
+
+
Représente un tuple de Valeurs X/Y pour nos données.
+
diff --git a/Doc/allpackages-index.html b/Doc/allpackages-index.html
index bdb59d7..af39f23 100644
--- a/Doc/allpackages-index.html
+++ b/Doc/allpackages-index.html
@@ -1,11 +1,11 @@
-
+
All Packages
-
+
@@ -66,6 +66,12 @@ loadScripts(document, 'script');
+
+
+
+
+
+
diff --git a/Doc/constant-values.html b/Doc/constant-values.html
index 3d63675..1a07790 100644
--- a/Doc/constant-values.html
+++ b/Doc/constant-values.html
@@ -1,11 +1,11 @@
-
+
Constant Field Values
-
+
@@ -52,6 +52,7 @@ loadScripts(document, 'script');
Constant Field Values
ecoparasite.input.* ecoparasite.svg.*
@@ -82,6 +83,40 @@ loadScripts(document, 'script');
+
+ecoparasite.svg.*
+
+
+
+
+
+
+
+
public static final int
+
+
10
+
+
+
"black"
+
+
+
"blue"
+
+
+
"red"
+
+
+
"white"
+
public static final int
+
+
50
+
public static final int
+
+
800
+
+
+
diff --git a/Doc/ecoparasite/Application.html b/Doc/ecoparasite/Application.html
index c169bd3..61a8a64 100644
--- a/Doc/ecoparasite/Application.html
+++ b/Doc/ecoparasite/Application.html
@@ -1,11 +1,11 @@
-
+
Application
-
+
@@ -63,6 +63,12 @@ loadScripts(document, 'script');
Method Details
+validFileName(File, HashSet) validFile() MackerelFile(String) MerluFile(String) PopPeru(String) test2Render(String) main(String[])
@@ -110,7 +116,26 @@ loadScripts(document, 'script');
static void
-
+
+
+
static void
+
+
+
static void
+
+
+
static void
+
+
+
static void
+
+
+
+
+
+
static void
+
@@ -146,6 +171,83 @@ loadScripts(document, 'script');
Method Details
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
@@ -296,6 +304,28 @@ Exemple d'utilisation : T = Poisson, V = Double, getValue = Poisson::getInfestat
+
+
+
diff --git a/Doc/ecoparasite/completion/package-summary.html b/Doc/ecoparasite/completion/package-summary.html
index eb65c2e..1204bef 100644
--- a/Doc/ecoparasite/completion/package-summary.html
+++ b/Doc/ecoparasite/completion/package-summary.html
@@ -1,11 +1,11 @@
-
+
ecoparasite.completion
-
+
@@ -75,14 +75,6 @@ loadScripts(document, 'script');
-
-
-
-
-
-
-
-
ecoparasite.completion Class Hierarchy
DataParsing
InputFactory
InputFileException
InvalidParsingException
RawData
RawDataOverflow
ecoparasite.input
-
-
-
-
-
-
-
-
diff --git a/Doc/ecoparasite/input/package-tree.html b/Doc/ecoparasite/input/package-tree.html
index b5d8cdf..a7ea8ed 100644
--- a/Doc/ecoparasite/input/package-tree.html
+++ b/Doc/ecoparasite/input/package-tree.html
@@ -1,11 +1,11 @@
-
+
ecoparasite.input Class Hierarchy
Nettoyage
Method Details
-nettoieColumnsMoyenne(HashSet, Function, BiConsumer, boolean) nettoieColumnsMoyenne(HashSet, Function, BiConsumer) nettoieColumnsLinear(HashSet, Function, Function, BiConsumer, boolean) nettoieColumnsLinear(HashSet, Function, Function, BiConsumer) nettoieColumns(HashSet, Function, BiConsumer, boolean) nettoieColumns(HashSet, Function, BiConsumer)
-
Polymorphisme de la fonction nettoyage de colonne linéaire avec par défaut, l'autorisation des valeurs négatives.
-
-
Permet de remplacer les valeurs abérrantes d'un paramètre d'un HashSet à l'aide d'une regression linéaire, corrélation entre deux valeurs.
-
nettoieColumnsMoyenne (HashSet <T> list,
+
Polymorphisme de la fonction précédente.
-nettoieColumnsMoyenne (HashSet <T> list,
+
-
Permet de remplacer les valeurs abérrantes d'un paramètre d'un HashSet par la moyenne des autres valeurs (non nulles).
+
Permet de remplacer les valeurs abérrantes d'un paramètre d'un HashSet par null.
Method Details
-
@@ -94,8 +98,6 @@ loadScripts(document, 'script');
-
-
diff --git a/Doc/ecoparasite/package-tree.html b/Doc/ecoparasite/package-tree.html
index 16ad8bc..a41e7a3 100644
--- a/Doc/ecoparasite/package-tree.html
+++ b/Doc/ecoparasite/package-tree.html
@@ -1,11 +1,11 @@
-
+
ecoparasite Class Hierarchy
java.lang.Object
diff --git a/Doc/ecoparasite/poisson/Mackerel.html b/Doc/ecoparasite/poisson/Mackerel.html
index 45b2c26..1727da0 100644
--- a/Doc/ecoparasite/poisson/Mackerel.html
+++ b/Doc/ecoparasite/poisson/Mackerel.html
@@ -1,11 +1,11 @@
-
+
Mackerel
getFishParts , getId , getInfestation , getLength , getWeight , setFishParts , setInfestation , setLength , toString MackerelSerra
getFishParts , getId , getInfestation , getLength , getWeight , setFishParts , setInfestation , setLength , toString Merlu
getFishParts , getId , getInfestation , getLength , getWeight , setFishParts , setInfestation , setLength , toString PartiePoisson
Poisson
getInfestation() getFishParts() setInfestation(Double) setLength(Double) setFishParts(HashSet) toString()
Setter de l'attribut infestation
-
-
+void
+
+
Setter de l'attribut length
+
Permet d'afficher les informations de notre poisson
@@ -327,6 +333,19 @@ Des types hérités plus précis, notamment pour le parsing sont disponibles dan
+
+
+
diff --git a/Doc/ecoparasite/poisson/package-tree.html b/Doc/ecoparasite/poisson/package-tree.html
index 2cc58f0..4a3fe51 100644
--- a/Doc/ecoparasite/poisson/package-tree.html
+++ b/Doc/ecoparasite/poisson/package-tree.html
@@ -1,11 +1,11 @@
-
+
ecoparasite.poisson Class Hierarchy
Population
PopulationArgInterval
PopulationArgs
-
+
+
Avoir sous forme de string les données de nos arguments de population.
+
toString
diff --git a/Doc/ecoparasite/population/PopulationParsing.html b/Doc/ecoparasite/population/PopulationParsing.html
index 8eb21e9..fd530c5 100644
--- a/Doc/ecoparasite/population/PopulationParsing.html
+++ b/Doc/ecoparasite/population/PopulationParsing.html
@@ -1,11 +1,11 @@
-
+
PopulationParsing
ecoparasite.population
-
-
-
-
-
-
-
-
diff --git a/Doc/ecoparasite/population/package-tree.html b/Doc/ecoparasite/population/package-tree.html
index afd976f..b304d36 100644
--- a/Doc/ecoparasite/population/package-tree.html
+++ b/Doc/ecoparasite/population/package-tree.html
@@ -1,11 +1,11 @@
-
+
ecoparasite.population Class Hierarchy
ValeursXY
+
+JavaScript is disabled on your browser.
+
+
+
+
+
+
+Description Constructor Summary Method Summary Constructor Details
+
+ValeursXY(double, double)
+Method Details
+
+getX() setX(double) getY() setY(double) convertToXY(HashSet, Function, Function)
+
+
+
+
+
+
+
+
+
+
+
+
+Constructor Summary
+Constructors
+
+
+
+
+
+
+Method Summary
+
+
All Methods Static Methods Instance Methods Concrete Methods
+
+
+
+
+
+
+
+
+
Permet de convertir un type de données en valeursXY.
+
+
double
+
+
+
double
+
+
+
void
+
+
+
void
+
+
+
+
+
+
Methods inherited from class Object
+
clone , equals , finalize , getClass , hashCode , notify , notifyAll , toString , wait , wait , wait
+
+
+
+
+
+
+
+
+
+
+
+
+Method Details
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
ecoparasite.representation
+
+JavaScript is disabled on your browser.
+
+
+
+
+
+
+Description Related Packages Classes and Interfaces
+
+
+
+
+
+
+
+
+
+
+
Classes
+
+
+
+
+
+
Représente un tuple de Valeurs X/Y pour nos données.
+
+
+
+
+
+
+
ecoparasite.representation Class Hierarchy
+
+JavaScript is disabled on your browser.
+
+
+
+
+
+Package Hierarchies:
+
+
+
+
Coordonnees
+
+JavaScript is disabled on your browser.
+
+
+
+
+
+
+Description Constructor Summary Method Summary Constructor Details
+
+Coordonnees(double, double)
+Method Details
+
+getX() setX(double) getY() setY(double)
+
+
+
+
+
+
+
+
+
+
+
+
+Constructor Summary
+Constructors
+
+
+
+
+
+
+Method Summary
+
+
All Methods Instance Methods Concrete Methods
+
+
+
+
+
+
double
+
+
+
double
+
+
+
void
+
+
+
void
+
+
+
+
+
+
Methods inherited from class Object
+
clone , equals , finalize , getClass , hashCode , notify , notifyAll , toString , wait , wait , wait
+
+
+
+
+
+
+
+
+
+
+
+
+Method Details
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
IncorrectAxesPointsException
+
+JavaScript is disabled on your browser.
+
+
+
+
+
+
+Description Constructor Summary Method Summary Constructor Details
+
+IncorrectAxesPointsException()
+
+
+
+
+
+
+
+
+
+
+
+
+Constructor Summary
+Constructors
+
+
+
+
+
+
+Method Summary
+
+
Methods inherited from class Throwable
+
addSuppressed , fillInStackTrace , getCause , getLocalizedMessage , getMessage , getStackTrace , getSuppressed , initCause , printStackTrace , printStackTrace , printStackTrace , setStackTrace , toString
+
+
+
+
+
+
+
+
+Constructor Details
+
+
+
+IncorrectAxesPointsException
+
+
+
+
+
+
+
+
+
+
+
SVGBuilder
+
+JavaScript is disabled on your browser.
+
+
+
+
+
+
+Description Constructor Summary Method Summary Constructor Details
+
+SVGBuilder(HashMap)
+Method Details
+
+getPointsX() getPointsY() getOffsetX() getOffsetY() getResizer() setResizer(SVGResizing) buildAll(String, String, HashSet, double, double) buildAxes(String, String) buildXTicks() buildYTicks() buildPoints(HashSet) buildRegression(double, double) calcPointAxes(HashSet) niceStep(double, int) roundMin(double, double) roundMax(double, double)
+
+
+
+
+
+
+
+
+
+
+
+
+Constructor Summary
+Constructors
+
+
+
+
+
+
+Method Summary
+
+
All Methods Static Methods Instance Methods Concrete Methods
+
+
+
+
+
+
+
+
+
Permet de tout construire d'un seul coup.
+
+
+
+
+
Permet de construire les axes au format SVG.
+
+
+
+
+
Construire le nuage de points sur le SVG.
+
+
+
+
+
Construire la droite de regression linéaire.
+
+
+
+
+
Permet de construire les batons de l'axe X.
+
+
+
+
+
Permet de construire les batons de l'axe Y.
+
+
+
+
+
Permet de renvoyer des valeurs "clean" pour l'affichage des axes
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
Permet d'obtenir un resizer ou bien le crée s'il n'existe pas déjà.
+
+
static double
+
niceStep (double range,
+ int targetTicks)
+
+
Fonction de calcul d'un step rond
+Cette fonction est basé sur une idée demandée à ChatGPT
+
+
static double
+
+
+
static double
+
+
+
retourne une valeur arrondi "joli" adapter à un graphique
+
+
void
+
+
+
+
+
+
Methods inherited from class Object
+
clone , equals , finalize , getClass , hashCode , notify , notifyAll , toString , wait , wait , wait
+
+
+
+
+
+
+
+
+
+
+
+
+Method Details
+
+
+
+
+
+
+
+
+
+
+
+
+
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+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
SVGFactory
+
+JavaScript is disabled on your browser.
+
+
+
+
+
+
+Description Constructor Summary Method Summary Constructor Details
+
+SVGFactory()
+Method Details
+
+createSVG(ArrayList) createSVG(ArrayList, String) createSVGCode(ArrayList) createFile(String) createFile(String, String)
+
+
+
+
+
+
+
+
+
+
+
+
+Constructor Summary
+Constructors
+
+
+
+
+
+
+Method Summary
+
+
All Methods Static Methods Concrete Methods
+
+
+
+
+
+
static void
+
+
+
fonction qui créer le fichier, ici avec une ID random comme nom de fichier
+
+
static void
+
+
+
Permet la création du fichier
+
+
static boolean
+
+
+
Permet la création du fichier SVG
+
+
static boolean
+
+
+
Permet la création du fichier SVG (Polymorphisme pour ajouter un nom de fichier)
+
+
+
+
+
Fonction basique de transformation des éléments en code SVG
+
+
+
+
+
Methods inherited from class Object
+
clone , equals , finalize , getClass , hashCode , notify , notifyAll , toString , wait , wait , wait
+
+
+
+
+
+
+
+
+
+
+
+
+Method Details
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
SVGResizing
+
+JavaScript is disabled on your browser.
+
+
+
+
+
+
+Description Constructor Summary Method Summary Constructor Details
+
+SVGResizing(double, double, double, double)
+Method Details
+
+getMinX() getMaxX() getMinY() getMaxY() resize(ValeursXY) resize(double, double)
+
+
+
+
+
+
+
+
+
+
+
+
+Constructor Summary
+Constructors
+
+
+
+
SVGResizing (double minXGrad,
+ double minYGrad,
+ double maxXGrad,
+ double maxYGrad)
+
+
+
+
+
+
+Method Summary
+
+
All Methods Instance Methods Concrete Methods
+
+
+
+
+
+
double
+
+
+
double
+
+
+
double
+
+
+
double
+
+
+
+
+
+
Permet de redimensionner quelconque valeur X Y (Provenant de ValeursXY par exemple) en Coordonnées SVG.
+
+
+
+
+
+
+
+
Methods inherited from class Object
+
clone , equals , finalize , getClass , hashCode , notify , notifyAll , toString , wait , wait , wait
+
+
+
+
+
+
+
+
+
+
+
+
+Method Details
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
Circle
+
+JavaScript is disabled on your browser.
+
+
+
+
+
+
+Description Field Summary Constructor Summary Method Summary Constructor Details
+
+Circle(Coordonnees, int, String) Circle(Coordonnees, int)
+Method Details
+
+getRayon() setRayon(int) getColor() setColor(String) toSVG()
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+Constructor Summary
+Constructors
+
+
+
+
+
+
+Method Summary
+
+
All Methods Instance Methods Concrete Methods
+
+
+
+
+
+
+
+
+
int
+
+
+
void
+
+
+
void
+
+
+
+
+
+
+
+
+
Methods inherited from class Object
+
clone , equals , finalize , getClass , hashCode , notify , notifyAll , toString , wait , wait , wait
+
+
+
+
+
+
+
+
+
+
+
+
+Method Details
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
Element
+
+JavaScript is disabled on your browser.
+
+
+
+
+
+
+Description Field Summary Constructor Summary Method Summary Field Details
+
+coordonnees
+Constructor Details
+
+Element(Coordonnees)
+Method Details
+
+getCoordonnees() setCoordonnees(Coordonnees) setCoordonnees(int, int) toSVG()
+
+
+
+
+
+
+
+
+
+
+
+
+Field Summary
+Fields
+
+
+
+
+
+
+Constructor Summary
+Constructors
+
+
+
+
+
+
Constructeur par défaut.
+
+
+
+
+
+
+Method Summary
+
+
All Methods Instance Methods Abstract Methods Concrete Methods
+
+
+
+
+
+
+
+
+
void
+
+
+
void
+
+
+
+
+
+
Méthode abstraite qui va permettre de transformer notre élément en SVG.
+
+
+
+
+
Methods inherited from class Object
+
clone , equals , finalize , getClass , hashCode , notify , notifyAll , toString , wait , wait , wait
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+Method Details
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
ElementsFactory
+
+JavaScript is disabled on your browser.
+
+
+
+
+
+
+Description Field Summary Constructor Summary Method Summary Field Details
+
+SVG_SIZE SVG_OFFSET AXES_TEXT_SIZE COLOR_WHITE COLOR_RED COLOR_BLUE COLOR_BLACK
+Constructor Details
+
+ElementsFactory()
+
+
+
+
+
+
+
+
+
+
+
+
+Field Summary
+Fields
+
+
+
+
+
static final int
+
+
+
La taille du texte pour les axes.
+
+
+
+
+
+
+
+
+
+
+
+
+
+
static final int
+
+
+
Le décalage de cadre du fichier SVG.
+
+
static final int
+
+
+
Taille du fichier SVG.
+
+
+
+
+
+
+Constructor Summary
+Constructors
+
+
+
+
+
+
+Method Summary
+
+
Methods inherited from class Object
+
clone , equals , finalize , getClass , hashCode , notify , notifyAll , toString , wait , wait , wait
+
+
+
+
+
+
+
+
+Field Details
+
+
+
+
+
+
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Line
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+JavaScript is disabled on your browser.
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+Description Field Summary Constructor Summary Method Summary Constructor Details
+
+Line(Coordonnees, Coordonnees, String, int) Line(Coordonnees, Coordonnees)
+Method Details
+
+getCoordonneesA() setCoordonneesA(Coordonnees) getCoordonneesB() setCoordonneesB(Coordonnees) getColor() setColor(String) getLineWidth() setLineWidth(int) toSVG()
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+Constructor Summary
+Constructors
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+Method Summary
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int
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void
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void
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void
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void
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Génère la string SVG de l'élément.
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Methods inherited from class Object
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clone , equals , finalize , getClass , hashCode , notify , notifyAll , toString , wait , wait , wait
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+
Text
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+JavaScript is disabled on your browser.
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+Description Field Summary Constructor Summary Method Summary Constructor Details
+
+Text(Coordonnees, String, String, int) Text(Coordonnees, String)
+Method Details
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+getText() setText(String) getColor() setColor(String) getSize() setSize(int) toSVG()
+
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+Constructor Summary
+Constructors
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+Method Summary
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All Methods Instance Methods Concrete Methods
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int
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void
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void
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void
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Methods inherited from class Object
+
clone , equals , finalize , getClass , hashCode , notify , notifyAll , toString , wait , wait , wait
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+Method Details
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ecoparasite.svg.elements
+
+JavaScript is disabled on your browser.
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+Description Related Packages Classes and Interfaces
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Classes
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Classe abstraite qui permet de définir des éléments SVG.
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+
Contient divers éléments utiles pour les fichiers SVG.
+
+
+
+
Permet de construire une droite/ligne en SVG.
+
+
+
+
Élement qui permet de générer un texte sur le SVG.
+
+
+
+
+
+
+
ecoparasite.svg.elements Class Hierarchy
+
+JavaScript is disabled on your browser.
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+Package Hierarchies:
+
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+
ecoparasite.svg
+
+JavaScript is disabled on your browser.
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+Description Related Packages Classes and Interfaces
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+
All Classes and Interfaces Classes Exception Classes
+
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+
Classe qui permet de stocker les coordonnées utilisées pour le positionnement sur le fichier SVG.
+
+
+
+
Exception déclenchée lorsque le format des Axes est incorrect par rapport à ce que la fonction attend.
+
+
+
+
Classe qui permet de construire les éléments présents sur le SVG.
+
+
+
+
+
+
Classe qui permet de convertir des doubles en dimension SVG.
+
+
+
+
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+
ecoparasite.svg Class Hierarchy
+
+JavaScript is disabled on your browser.
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+Package Hierarchies:
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API Help
A-Index
A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
A
Application - Class in ecoparasite
Application() - Constructor for class ecoparasite.Application
-applyValueForPopEval(PopulationArgs, String, String) - Static method in class ecoparasite.LectureEval
+AXES_TEXT_SIZE - Static variable in class ecoparasite.svg.elements.ElementsFactory
+La taille du texte pour les axes.
+
-A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
diff --git a/Doc/index-files/index-10.html b/Doc/index-files/index-10.html
index 4d47d18..3a832f2 100644
--- a/Doc/index-files/index-10.html
+++ b/Doc/index-files/index-10.html
@@ -1,11 +1,11 @@
-
+
M-Index
A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
M
Mackerel - Class in ecoparasite.poisson
Constructeur de Mackerel
+MackerelFile(String) - Static method in class ecoparasite.Application
MackerelSerra - Class in ecoparasite.poisson
Classe MackerelSerra créer pour le fichier test2.csv
@@ -72,8 +74,6 @@ cette classe existe principalement pour l'évaluation
main(String[]) - Static method in class ecoparasite.Application
-main(String[]) - Static method in class ecoparasite.LectureEval
Merlu - Class in ecoparasite.poisson
Hérite de Poisson.
@@ -82,8 +82,10 @@ cette classe existe principalement pour l'évaluation
Construteur d'un merlu
+ MerluFile(String) - Static method in class ecoparasite.Application
-A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
diff --git a/Doc/index-files/index-11.html b/Doc/index-files/index-11.html
index 08f59c0..c1a53ac 100644
--- a/Doc/index-files/index-11.html
+++ b/Doc/index-files/index-11.html
@@ -1,11 +1,11 @@
-
+
N-Index
A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
N
-nettoieColumnsLinear(HashSet, Function, Function, BiConsumer) - Static method in class ecoparasite.nettoyage.Nettoyage
-Polymorphisme de la fonction nettoyage de colonne linéaire avec par défaut, l'autorisation des valeurs négatives.
-
-nettoieColumnsLinear(HashSet, Function, Function, BiConsumer, boolean) - Static method in class ecoparasite.nettoyage.Nettoyage
-Permet de remplacer les valeurs abérrantes d'un paramètre d'un HashSet à l'aide d'une regression linéaire, corrélation entre deux valeurs.
-
-nettoieColumnsMoyenne(HashSet, Function, BiConsumer) - Static method in class ecoparasite.nettoyage.Nettoyage nettoieColumns(HashSet, Function, BiConsumer) - Static method in class ecoparasite.nettoyage.Nettoyage
Polymorphisme de la fonction précédente.
-nettoieColumnsMoyenne(HashSet, Function, BiConsumer, boolean) - Static method in class ecoparasite.nettoyage.Nettoyage nettoieColumns(HashSet, Function, BiConsumer, boolean) - Static method in class ecoparasite.nettoyage.Nettoyage
-Permet de remplacer les valeurs abérrantes d'un paramètre d'un HashSet par la moyenne des autres valeurs (non nulles).
+Permet de remplacer les valeurs abérrantes d'un paramètre d'un HashSet par null.
Nettoyage - Class in ecoparasite.nettoyage
@@ -75,8 +67,13 @@ loadScripts(document, 'script');
Nettoyage() - Constructor for class ecoparasite.nettoyage.Nettoyage
+niceStep(double, int) - Static method in class ecoparasite.svg.SVGBuilder
+Fonction de calcul d'un step rond
+Cette fonction est basé sur une idée demandée à ChatGPT
+
-A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
diff --git a/Doc/index-files/index-12.html b/Doc/index-files/index-12.html
index 7f84766..9ba87ab 100644
--- a/Doc/index-files/index-12.html
+++ b/Doc/index-files/index-12.html
@@ -1,11 +1,11 @@
-
+
P-Index
A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
P
parse(RawData) - Static method in interface ecoparasite.input.DataParsing
Raccourci vers les méthodes de DataParsing.
-parseEval(RawData) - Static method in class ecoparasite.LectureEval
parseParasitesPeru(RawData) - Static method in class ecoparasite.population.PopulationParsing
Permet, à partir d'un objet RawData, de parse les données tel que le fichier parasitesPeru est structuré.
@@ -117,6 +115,8 @@ loadScripts(document, 'script');
Constructeur de l'objet Poisson
+ PopPeru(String) - Static method in class ecoparasite.Application
Population - Class in ecoparasite.population
Permet de gérer une population selon les années.
@@ -172,7 +172,7 @@ loadScripts(document, 'script');
PopulationParsing() - Constructor for class ecoparasite.population.PopulationParsing
-A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
diff --git a/Doc/index-files/index-13.html b/Doc/index-files/index-13.html
index 4c6ef39..b41b64d 100644
--- a/Doc/index-files/index-13.html
+++ b/Doc/index-files/index-13.html
@@ -1,11 +1,11 @@
-
+
R-Index
A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
R
RawData - Class in ecoparasite.input
Permet de lire les données brutes d'un fichier CSV.
+resize(double, double) - Method in class ecoparasite.svg.SVGResizing
+Permet de redimensionner quelconque valeur X Y (Provenant de ValeursXY par exemple) en Coordonnées SVG.
+
+resize(ValeursXY) - Method in class ecoparasite.svg.SVGResizing
+roundMax(double, double) - Static method in class ecoparasite.svg.SVGBuilder
+roundMin(double, double) - Static method in class ecoparasite.svg.SVGBuilder
+retourne une valeur arrondi "joli" adapter à un graphique
+
-A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
diff --git a/Doc/index-files/index-14.html b/Doc/index-files/index-14.html
index 5073b47..3f49a8c 100644
--- a/Doc/index-files/index-14.html
+++ b/Doc/index-files/index-14.html
@@ -1,11 +1,11 @@
-
+
S-Index
A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
S
setAbondance(Double) - Method in class ecoparasite.population.PopulationArgs
+setColor(String) - Method in class ecoparasite.svg.elements.Circle
+setColor(String) - Method in class ecoparasite.svg.elements.Line
+setColor(String) - Method in class ecoparasite.svg.elements.Text
+setCoordonnees(int, int) - Method in class ecoparasite.svg.elements.Element
+setCoordonnees(Coordonnees) - Method in class ecoparasite.svg.elements.Element
+setCoordonneesA(Coordonnees) - Method in class ecoparasite.svg.elements.Line
+setCoordonneesB(Coordonnees) - Method in class ecoparasite.svg.elements.Line
setFishParts(HashSet) - Method in class ecoparasite.poisson.Poisson
Setter de l'attribut des parties de poisson.
@@ -71,6 +85,12 @@ loadScripts(document, 'script');
setLength(PopulationArgInterval) - Method in class ecoparasite.population.PopulationArgs
+setLength(Double) - Method in class ecoparasite.poisson.Poisson
+Setter de l'attribut length
+
+setLineWidth(int) - Method in class ecoparasite.svg.elements.Line
setName(String) - Method in class ecoparasite.poisson.PartiePoisson
setNumber(int) - Method in class ecoparasite.population.PopulationArgs
setPrevalence(PopulationArgInterval) - Method in class ecoparasite.population.PopulationArgs
+setRayon(int) - Method in class ecoparasite.svg.elements.Circle
+setResizer(SVGResizing) - Method in class ecoparasite.svg.SVGBuilder
+setSize(int) - Method in class ecoparasite.svg.elements.Text
+setText(String) - Method in class ecoparasite.svg.elements.Text
setTotal(PopulationArgs) - Method in class ecoparasite.population.Population
setWidth(PopulationArgInterval) - Method in class ecoparasite.population.PopulationArgs
+setX(double) - Method in class ecoparasite.representation.ValeursXY
+setX(double) - Method in class ecoparasite.svg.Coordonnees
+setY(double) - Method in class ecoparasite.representation.ValeursXY
+setY(double) - Method in class ecoparasite.svg.Coordonnees
setZone(String) - Method in class ecoparasite.population.PopulationArgs
+SVG_OFFSET - Static variable in class ecoparasite.svg.elements.ElementsFactory
+Le décalage de cadre du fichier SVG.
+
+SVG_SIZE - Static variable in class ecoparasite.svg.elements.ElementsFactory
+Taille du fichier SVG.
+
+SVGBuilder - Class in ecoparasite.svg
+Classe qui permet de construire les éléments présents sur le SVG.
+
+SVGBuilder(HashMap) - Constructor for class ecoparasite.svg.SVGBuilder
+Constructeur.
+
+SVGFactory - Class in ecoparasite.svg
+SVGFactory() - Constructor for class ecoparasite.svg.SVGFactory
+SVGResizing - Class in ecoparasite.svg
+Classe qui permet de convertir des doubles en dimension SVG.
+
+SVGResizing(double, double, double, double) - Constructor for class ecoparasite.svg.SVGResizing
+Constructeur.
+
-A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
diff --git a/Doc/index-files/index-15.html b/Doc/index-files/index-15.html
index cf385c4..24d75d1 100644
--- a/Doc/index-files/index-15.html
+++ b/Doc/index-files/index-15.html
@@ -1,11 +1,11 @@
-
+
T-Index
A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
T
+test2Render(String) - Static method in class ecoparasite.Application
+Text - Class in ecoparasite.svg.elements
+Élement qui permet de générer un texte sur le SVG.
+
+Text(Coordonnees, String) - Constructor for class ecoparasite.svg.elements.Text
+Text(Coordonnees, String, String, int) - Constructor for class ecoparasite.svg.elements.Text
+Constructeur
+
toString() - Method in class ecoparasite.input.RawData
Permet d'avoir un affichage debug du contenu de notre jeu de données.
@@ -64,13 +76,31 @@ loadScripts(document, 'script');
toString() - Method in class ecoparasite.population.Population
toString() - Method in class ecoparasite.population.PopulationArgs
+
+Avoir sous forme de string les données de nos arguments de population.
+
+toSVG() - Method in class ecoparasite.svg.elements.Circle
+Crée la string SVG.
+
+toSVG() - Method in class ecoparasite.svg.elements.Element
+Méthode abstraite qui va permettre de transformer notre élément en SVG.
+
+toSVG() - Method in class ecoparasite.svg.elements.Line
+Génère la string SVG de l'élément.
+
+toSVG() - Method in class ecoparasite.svg.elements.Text
+Génère la string SVG.
+
transformToDouble() - Method in class ecoparasite.population.PopulationArgInterval
Permet de transformer un intervalle en double.
-A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
diff --git a/Doc/index-files/index-16.html b/Doc/index-files/index-16.html
new file mode 100644
index 0000000..df5bd89
--- /dev/null
+++ b/Doc/index-files/index-16.html
@@ -0,0 +1,72 @@
+
+
+
+
+V-Index
+
+JavaScript is disabled on your browser.
+
+
+
+
+
diff --git a/Doc/index-files/index-2.html b/Doc/index-files/index-2.html
index fdb6eb9..5e470e3 100644
--- a/Doc/index-files/index-2.html
+++ b/Doc/index-files/index-2.html
@@ -1,11 +1,11 @@
-
+
B-Index
A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
B
+buildAll(String, String, HashSet, double, double) - Method in class ecoparasite.svg.SVGBuilder
+Permet de tout construire d'un seul coup.
+
+buildAxes(String, String) - Method in class ecoparasite.svg.SVGBuilder
+Permet de construire les axes au format SVG.
+
buildDataPath(String) - Static method in class ecoparasite.input.InputFactory
Construit le chemin vers le fichier de données voulu.
+buildPoints(HashSet) - Method in class ecoparasite.svg.SVGBuilder
+Construire le nuage de points sur le SVG.
+
+buildRegression(double, double) - Method in class ecoparasite.svg.SVGBuilder
+Construire la droite de regression linéaire.
+
+buildXTicks() - Method in class ecoparasite.svg.SVGBuilder
+Permet de construire les batons de l'axe X.
+
+buildYTicks() - Method in class ecoparasite.svg.SVGBuilder
+Permet de construire les batons de l'axe Y.
+
-A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
diff --git a/Doc/index-files/index-3.html b/Doc/index-files/index-3.html
index 8ca40f9..06d32b9 100644
--- a/Doc/index-files/index-3.html
+++ b/Doc/index-files/index-3.html
@@ -1,11 +1,11 @@
-
+
C-Index
A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
C
+calcPointAxes(HashSet) - Static method in class ecoparasite.svg.SVGBuilder
+Permet de renvoyer des valeurs "clean" pour l'affichage des axes
+
calculateLinearA(HashSet, Function, Function, double, double) - Static method in class ecoparasite.completion.Completion
Permet de calculer le coefficient A de notre regression linéaire.
@@ -65,6 +69,24 @@ loadScripts(document, 'script');
Permet de calculer la moyenne d'une donnée des valeurs non nulles.
+ Circle - Class in ecoparasite.svg.elements
+Element Cercle SVG.
+
+Circle(Coordonnees, int) - Constructor for class ecoparasite.svg.elements.Circle
+Circle(Coordonnees, int, String) - Constructor for class ecoparasite.svg.elements.Circle
+Constructeur.
+
+COLOR_BLACK - Static variable in class ecoparasite.svg.elements.ElementsFactory
+COLOR_BLUE - Static variable in class ecoparasite.svg.elements.ElementsFactory
+COLOR_RED - Static variable in class ecoparasite.svg.elements.ElementsFactory
+COLOR_WHITE - Static variable in class ecoparasite.svg.elements.ElementsFactory
completeColumnsLinear(HashSet, Function, Function, BiConsumer) - Static method in class ecoparasite.completion.Completion
Permet de remplacer les valeurs inexistantes par les valeurs les plus probables avec une regression linéaire
@@ -79,8 +101,40 @@ loadScripts(document, 'script');
Completion() - Constructor for class ecoparasite.completion.Completion
+convertToXY(HashSet, Function, Function) - Static method in class ecoparasite.representation.ValeursXY
+Permet de convertir un type de données en valeursXY.
+
+coordonnees - Variable in class ecoparasite.svg.elements.Element
+Coordonnees - Class in ecoparasite.svg
+Classe qui permet de stocker les coordonnées utilisées pour le positionnement sur le fichier SVG.
+
+Coordonnees(double, double) - Constructor for class ecoparasite.svg.Coordonnees
+createFile(String) - Static method in class ecoparasite.svg.SVGFactory
+fonction qui créer le fichier, ici avec une ID random comme nom de fichier
+
+createFile(String, String) - Static method in class ecoparasite.svg.SVGFactory
+Permet la création du fichier
+
+createSVG(ArrayList) - Static method in class ecoparasite.svg.SVGFactory
+Permet la création du fichier SVG
+
+createSVG(ArrayList, String) - Static method in class ecoparasite.svg.SVGFactory
+Permet la création du fichier SVG (Polymorphisme pour ajouter un nom de fichier)
+
+createSVGCode(ArrayList) - Static method in class ecoparasite.svg.SVGFactory
+Fonction basique de transformation des éléments en code SVG
+
-A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
diff --git a/Doc/index-files/index-4.html b/Doc/index-files/index-4.html
index 4847a19..4f588cc 100644
--- a/Doc/index-files/index-4.html
+++ b/Doc/index-files/index-4.html
@@ -1,11 +1,11 @@
-
+
D-Index
A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
D
DATA_MACKEREL - Static variable in class ecoparasite.input.InputFactory Interface définissant la fonction de Parsing des données
-A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
diff --git a/Doc/index-files/index-5.html b/Doc/index-files/index-5.html
index 8de4295..4d4557d 100644
--- a/Doc/index-files/index-5.html
+++ b/Doc/index-files/index-5.html
@@ -1,11 +1,11 @@
-
+
E-Index
A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
E
ecoparasite - package ecoparasite
ecoparasite.population - package ecoparasite.population
+ecoparasite.representation - package ecoparasite.representation
+ecoparasite.svg - package ecoparasite.svg
+ecoparasite.svg.elements - package ecoparasite.svg.elements
+Element - Class in ecoparasite.svg.elements
+Classe abstraite qui permet de définir des éléments SVG.
+
+Element(Coordonnees) - Constructor for class ecoparasite.svg.elements.Element
+Constructeur par défaut.
+
+ElementsFactory - Class in ecoparasite.svg.elements
+Contient divers éléments utiles pour les fichiers SVG.
+
+ElementsFactory() - Constructor for class ecoparasite.svg.elements.ElementsFactory
-A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
diff --git a/Doc/index-files/index-6.html b/Doc/index-files/index-6.html
index f8ed738..7cd6d9d 100644
--- a/Doc/index-files/index-6.html
+++ b/Doc/index-files/index-6.html
@@ -1,11 +1,11 @@
-
+
F-Index
A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
F
fishParts - Variable in class ecoparasite.poisson.Poisson Permet de transformer une String (Extraite d'un fichier CSV) et de la transformer en Intervalle.
-A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
diff --git a/Doc/index-files/index-7.html b/Doc/index-files/index-7.html
index c5bb321..0ad0348 100644
--- a/Doc/index-files/index-7.html
+++ b/Doc/index-files/index-7.html
@@ -1,11 +1,11 @@
-
+
G-Index
A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
G
getAbondance() - Method in class ecoparasite.population.PopulationArgs
+getColor() - Method in class ecoparasite.svg.elements.Circle
+getColor() - Method in class ecoparasite.svg.elements.Line
+getColor() - Method in class ecoparasite.svg.elements.Text
getColumnsNames() - Method in class ecoparasite.input.RawData
Permet d'obtenir le nom des colonnes de notre jeu de données.
+getCoordonnees() - Method in class ecoparasite.svg.elements.Element
+getCoordonneesA() - Method in class ecoparasite.svg.elements.Line
+getCoordonneesB() - Method in class ecoparasite.svg.elements.Line
getData() - Method in class ecoparasite.input.RawData
Getter des données brutes.
@@ -97,8 +109,18 @@ loadScripts(document, 'script');
getLength() - Method in class ecoparasite.population.PopulationArgs
+getLinearCoef(HashSet, Function, Function) - Static method in class ecoparasite.completion.Completion
+Permet de retourner les coefficients de la regression linéaire.
+
+getLineWidth() - Method in class ecoparasite.svg.elements.Line
getMax() - Method in class ecoparasite.population.PopulationArgInterval
+getMaxX() - Method in class ecoparasite.svg.SVGResizing
+getMaxY() - Method in class ecoparasite.svg.SVGResizing
getMean() - Method in class ecoparasite.population.PopulationArgInterval
getMessage() - Method in exception class ecoparasite.input.InputFileException
getMin() - Method in class ecoparasite.population.PopulationArgInterval
+getMinX() - Method in class ecoparasite.svg.SVGResizing
+getMinY() - Method in class ecoparasite.svg.SVGResizing
getName() - Method in class ecoparasite.poisson.PartiePoisson
getNumber() - Method in class ecoparasite.population.PopulationArgs
+getOffsetX() - Method in class ecoparasite.svg.SVGBuilder
+getOffsetY() - Method in class ecoparasite.svg.SVGBuilder
getParsingId() - Method in exception class ecoparasite.input.InvalidParsingException
getParsingSource() - Method in exception class ecoparasite.input.InvalidParsingException
getPerYear() - Method in class ecoparasite.population.Population
+getPointsX() - Method in class ecoparasite.svg.SVGBuilder
+getPointsY() - Method in class ecoparasite.svg.SVGBuilder
getPrevalence() - Method in class ecoparasite.population.PopulationArgs
+getRayon() - Method in class ecoparasite.svg.elements.Circle
+getResizer() - Method in class ecoparasite.svg.SVGBuilder
+Permet d'obtenir un resizer ou bien le crée s'il n'existe pas déjà.
+
+getSize() - Method in class ecoparasite.svg.elements.Text
+getText() - Method in class ecoparasite.svg.elements.Text
getTotal() - Method in class ecoparasite.population.Population
getWeight() - Method in class ecoparasite.poisson.Poisson getWidth() - Method in class ecoparasite.population.PopulationArgs
+getX() - Method in class ecoparasite.representation.ValeursXY
+getX() - Method in class ecoparasite.svg.Coordonnees
+getY() - Method in class ecoparasite.representation.ValeursXY
+getY() - Method in class ecoparasite.svg.Coordonnees
getYear() - Method in class ecoparasite.population.PopulationArgs
getZone() - Method in class ecoparasite.population.PopulationArgs
-A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
diff --git a/Doc/index-files/index-8.html b/Doc/index-files/index-8.html
index d0317b2..19f118c 100644
--- a/Doc/index-files/index-8.html
+++ b/Doc/index-files/index-8.html
@@ -1,11 +1,11 @@
-
+
I-Index
A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
I
+IncorrectAxesPointsException - Exception Class in ecoparasite.svg
+Exception déclenchée lorsque le format des Axes est incorrect par rapport à ce que la fonction attend.
+
+IncorrectAxesPointsException() - Constructor for exception class ecoparasite.svg.IncorrectAxesPointsException
InputFactory - Class in ecoparasite.input
Permet de manipuler les fichiers CSV, de les lire et d'en créer des objets RawData pour ces données brutes.
@@ -75,7 +81,7 @@ qu'une erreur est survenue durant le parsing d'une donnée.
Constructeur.
-A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
diff --git a/Doc/index-files/index-9.html b/Doc/index-files/index-9.html
index a46311e..8b4bf19 100644
--- a/Doc/index-files/index-9.html
+++ b/Doc/index-files/index-9.html
@@ -1,11 +1,11 @@
-
+
L-Index
A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
L
-LectureEval - Class in ecoparasite
-LectureEval() - Constructor for class ecoparasite.LectureEval Line - Class in ecoparasite.svg.elements
+Permet de construire une droite/ligne en SVG.
+
+Line(Coordonnees, Coordonnees) - Constructor for class ecoparasite.svg.elements.Line
+Line(Coordonnees, Coordonnees, String, int) - Constructor for class ecoparasite.svg.elements.Line
+Constructeur
+
-A B C D E F G I L M N P R S T All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
+A B C D E F G I L M N P R S T V All Classes and Interfaces | All Packages | Constant Field Values | Serialized Form
diff --git a/Doc/index.html b/Doc/index.html
index d4f5b0d..06212af 100644
--- a/Doc/index.html
+++ b/Doc/index.html
@@ -1,11 +1,11 @@
-
+
Overview
+
+
+
+
+
+
diff --git a/Doc/member-search-index.js b/Doc/member-search-index.js
index d3d602b..7bffb89 100644
--- a/Doc/member-search-index.js
+++ b/Doc/member-search-index.js
@@ -1 +1 @@
-memberSearchIndex = [{"p":"ecoparasite","c":"Application","l":"Application()","u":"%3Cinit%3E()","k":"3"},{"p":"ecoparasite","c":"LectureEval","l":"applyValueForPopEval(PopulationArgs, String, String)","u":"applyValueForPopEval(ecoparasite.population.PopulationArgs,java.lang.String,java.lang.String)","k":"6"},{"p":"ecoparasite.input","c":"InputFactory","l":"buildDataPath(String)","u":"buildDataPath(java.lang.String)","k":"6"},{"p":"ecoparasite.completion","c":"Completion","l":"calculateLinearA(HashSet, Function, Function, double, double)","u":"calculateLinearA(java.util.HashSet,java.util.function.Function,java.util.function.Function,double,double)","k":"6"},{"p":"ecoparasite.completion","c":"Completion","l":"calculateLinearB(double, double, double)","u":"calculateLinearB(double,double,double)","k":"6"},{"p":"ecoparasite.completion","c":"Completion","l":"calculateMean(HashSet, Function)","u":"calculateMean(java.util.HashSet,java.util.function.Function)","k":"6"},{"p":"ecoparasite.completion","c":"Completion","l":"completeColumnsLinear(HashSet, Function, Function, BiConsumer)","u":"completeColumnsLinear(java.util.HashSet,java.util.function.Function,java.util.function.Function,java.util.function.BiConsumer)","k":"6"},{"p":"ecoparasite.completion","c":"Completion","l":"completeColumnsMoyenne(HashSet, Function, BiConsumer)","u":"completeColumnsMoyenne(java.util.HashSet,java.util.function.Function,java.util.function.BiConsumer)","k":"6"},{"p":"ecoparasite.completion","c":"Completion","l":"Completion()","u":"%3Cinit%3E()","k":"3"},{"p":"ecoparasite.input","c":"InputFactory","l":"DATA_MACKEREL","k":"2"},{"p":"ecoparasite.input","c":"InputFactory","l":"DATA_MERLU","k":"2"},{"p":"ecoparasite.input","c":"InputFactory","l":"DATA_PARASITES_PERU","k":"2"},{"p":"ecoparasite.poisson","c":"Poisson","l":"fishParts","k":"1"},{"p":"ecoparasite.population","c":"PopulationArgInterval","l":"fromString(String)","u":"fromString(java.lang.String)","k":"6"},{"p":"ecoparasite.population","c":"PopulationArgs","l":"getAbondance()"},{"p":"ecoparasite.input","c":"RawData","l":"getColumnsNames()"},{"p":"ecoparasite.input","c":"RawData","l":"getData()"},{"p":"ecoparasite.input","c":"RawData","l":"getDataFromColumn(String)","u":"getDataFromColumn(java.lang.String)"},{"p":"ecoparasite.input","c":"RawData","l":"getEntry(int)"},{"p":"ecoparasite.poisson","c":"Poisson","l":"getFishParts()"},{"p":"ecoparasite.population","c":"PopulationArgs","l":"getIc()"},{"p":"ecoparasite.poisson","c":"Poisson","l":"getId()"},{"p":"ecoparasite.population","c":"Population","l":"getId()"},{"p":"ecoparasite.poisson","c":"PartiePoisson","l":"getInfestation()"},{"p":"ecoparasite.poisson","c":"Poisson","l":"getInfestation()"},{"p":"ecoparasite.population","c":"PopulationArgs","l":"getIntensity()"},{"p":"ecoparasite.poisson","c":"Poisson","l":"getLength()"},{"p":"ecoparasite.population","c":"PopulationArgs","l":"getLength()"},{"p":"ecoparasite.population","c":"PopulationArgInterval","l":"getMax()"},{"p":"ecoparasite.population","c":"PopulationArgInterval","l":"getMean()"},{"p":"ecoparasite.input","c":"InputFileException","l":"getMessage()"},{"p":"ecoparasite.input","c":"RawDataOverflow","l":"getMessage()"},{"p":"ecoparasite.population","c":"PopulationArgInterval","l":"getMin()"},{"p":"ecoparasite.poisson","c":"PartiePoisson","l":"getName()"},{"p":"ecoparasite.population","c":"PopulationArgs","l":"getNumber()"},{"p":"ecoparasite.input","c":"InvalidParsingException","l":"getParsingId()"},{"p":"ecoparasite.input","c":"InvalidParsingException","l":"getParsingSource()"},{"p":"ecoparasite.population","c":"Population","l":"getPerYear()"},{"p":"ecoparasite.population","c":"PopulationArgs","l":"getPrevalence()"},{"p":"ecoparasite.population","c":"Population","l":"getTotal()"},{"p":"ecoparasite.poisson","c":"Poisson","l":"getWeight()"},{"p":"ecoparasite.population","c":"PopulationArgs","l":"getWidth()"},{"p":"ecoparasite.population","c":"PopulationArgs","l":"getYear()"},{"p":"ecoparasite.population","c":"PopulationArgs","l":"getZone()"},{"p":"ecoparasite.input","c":"InputFactory","l":"InputFactory()","u":"%3Cinit%3E()","k":"3"},{"p":"ecoparasite.input","c":"InputFileException","l":"InputFileException(String)","u":"%3Cinit%3E(java.lang.String)","k":"3"},{"p":"ecoparasite.input","c":"InvalidParsingException","l":"InvalidParsingException(int, String)","u":"%3Cinit%3E(int,java.lang.String)","k":"3"},{"p":"ecoparasite","c":"LectureEval","l":"LectureEval()","u":"%3Cinit%3E()","k":"3"},{"p":"ecoparasite.poisson","c":"Mackerel","l":"Mackerel(String, Double, Double)","u":"%3Cinit%3E(java.lang.String,java.lang.Double,java.lang.Double)","k":"3"},{"p":"ecoparasite.poisson","c":"MackerelSerra","l":"MackerelSerra(String, Double, Double)","u":"%3Cinit%3E(java.lang.String,java.lang.Double,java.lang.Double)","k":"3"},{"p":"ecoparasite","c":"Application","l":"main(String[])","u":"main(java.lang.String[])","k":"6"},{"p":"ecoparasite","c":"LectureEval","l":"main(String[])","u":"main(java.lang.String[])","k":"6"},{"p":"ecoparasite.poisson","c":"Merlu","l":"Merlu(String, Double, Double)","u":"%3Cinit%3E(java.lang.String,java.lang.Double,java.lang.Double)","k":"3"},{"p":"ecoparasite.nettoyage","c":"Nettoyage","l":"nettoieColumnsLinear(HashSet, Function, Function, BiConsumer)","u":"nettoieColumnsLinear(java.util.HashSet,java.util.function.Function,java.util.function.Function,java.util.function.BiConsumer)","k":"6"},{"p":"ecoparasite.nettoyage","c":"Nettoyage","l":"nettoieColumnsLinear(HashSet, Function, Function, BiConsumer, boolean)","u":"nettoieColumnsLinear(java.util.HashSet,java.util.function.Function,java.util.function.Function,java.util.function.BiConsumer,boolean)","k":"6"},{"p":"ecoparasite.nettoyage","c":"Nettoyage","l":"nettoieColumnsMoyenne(HashSet, Function, BiConsumer)","u":"nettoieColumnsMoyenne(java.util.HashSet,java.util.function.Function,java.util.function.BiConsumer)","k":"6"},{"p":"ecoparasite.nettoyage","c":"Nettoyage","l":"nettoieColumnsMoyenne(HashSet, Function, BiConsumer, boolean)","u":"nettoieColumnsMoyenne(java.util.HashSet,java.util.function.Function,java.util.function.BiConsumer,boolean)","k":"6"},{"p":"ecoparasite.nettoyage","c":"Nettoyage","l":"Nettoyage()","u":"%3Cinit%3E()","k":"3"},{"p":"ecoparasite.input","c":"DataParsing","l":"parse(RawData)","u":"parse(ecoparasite.input.RawData)","k":"6"},{"p":"ecoparasite.poisson","c":"Mackerel","l":"parse(RawData)","u":"parse(ecoparasite.input.RawData)","k":"6"},{"p":"ecoparasite.poisson","c":"MackerelSerra","l":"parse(RawData)","u":"parse(ecoparasite.input.RawData)","k":"6"},{"p":"ecoparasite.poisson","c":"Merlu","l":"parse(RawData)","u":"parse(ecoparasite.input.RawData)","k":"6"},{"p":"ecoparasite.population","c":"Population","l":"parse(RawData)","u":"parse(ecoparasite.input.RawData)","k":"6"},{"p":"ecoparasite.input","c":"DataParsing","l":"parse(RawData, int)","u":"parse(ecoparasite.input.RawData,int)","k":"6"},{"p":"ecoparasite.poisson","c":"Mackerel","l":"parse(RawData, int)","u":"parse(ecoparasite.input.RawData,int)","k":"6"},{"p":"ecoparasite.poisson","c":"MackerelSerra","l":"parse(RawData, int)","u":"parse(ecoparasite.input.RawData,int)","k":"6"},{"p":"ecoparasite.poisson","c":"Merlu","l":"parse(RawData, int)","u":"parse(ecoparasite.input.RawData,int)","k":"6"},{"p":"ecoparasite.population","c":"Population","l":"parse(RawData, int)","u":"parse(ecoparasite.input.RawData,int)","k":"6"},{"p":"ecoparasite","c":"LectureEval","l":"parseEval(RawData)","u":"parseEval(ecoparasite.input.RawData)","k":"6"},{"p":"ecoparasite.population","c":"PopulationParsing","l":"parseParasitesPeru(RawData)","u":"parseParasitesPeru(ecoparasite.input.RawData)","k":"6"},{"p":"ecoparasite.poisson","c":"PartiePoisson","l":"PartiePoisson(String)","u":"%3Cinit%3E(java.lang.String)","k":"3"},{"p":"ecoparasite.poisson","c":"PartiePoisson","l":"PartiePoisson(String, Double)","u":"%3Cinit%3E(java.lang.String,java.lang.Double)","k":"3"},{"p":"ecoparasite.poisson","c":"Poisson","l":"Poisson(String, Double, Double, Double)","u":"%3Cinit%3E(java.lang.String,java.lang.Double,java.lang.Double,java.lang.Double)","k":"3"},{"p":"ecoparasite.population","c":"Population","l":"Population(String)","u":"%3Cinit%3E(java.lang.String)","k":"3"},{"p":"ecoparasite.population","c":"Population","l":"Population(String, PopulationArgs)","u":"%3Cinit%3E(java.lang.String,ecoparasite.population.PopulationArgs)","k":"3"},{"p":"ecoparasite.population","c":"Population","l":"Population(String, PopulationArgs, HashMap)","u":"%3Cinit%3E(java.lang.String,ecoparasite.population.PopulationArgs,java.util.HashMap)","k":"3"},{"p":"ecoparasite.population","c":"PopulationArgInterval","l":"PopulationArgInterval(Double, Double)","u":"%3Cinit%3E(java.lang.Double,java.lang.Double)","k":"3"},{"p":"ecoparasite.population","c":"PopulationArgInterval","l":"PopulationArgInterval(Double, Double, Double)","u":"%3Cinit%3E(java.lang.Double,java.lang.Double,java.lang.Double)","k":"3"},{"p":"ecoparasite.population","c":"PopulationArgs","l":"PopulationArgs()","u":"%3Cinit%3E()","k":"3"},{"p":"ecoparasite.population","c":"PopulationArgs","l":"PopulationArgs(int)","u":"%3Cinit%3E(int)","k":"3"},{"p":"ecoparasite.population","c":"PopulationArgs","l":"PopulationArgs(int, int, PopulationArgInterval, PopulationArgInterval, PopulationArgInterval, PopulationArgInterval, Double, Double)","u":"%3Cinit%3E(int,int,ecoparasite.population.PopulationArgInterval,ecoparasite.population.PopulationArgInterval,ecoparasite.population.PopulationArgInterval,ecoparasite.population.PopulationArgInterval,java.lang.Double,java.lang.Double)","k":"3"},{"p":"ecoparasite.population","c":"PopulationArgs","l":"PopulationArgs(int, PopulationArgInterval, PopulationArgInterval, PopulationArgInterval, PopulationArgInterval, Double, Double)","u":"%3Cinit%3E(int,ecoparasite.population.PopulationArgInterval,ecoparasite.population.PopulationArgInterval,ecoparasite.population.PopulationArgInterval,ecoparasite.population.PopulationArgInterval,java.lang.Double,java.lang.Double)","k":"3"},{"p":"ecoparasite.population","c":"PopulationParsing","l":"PopulationParsing()","u":"%3Cinit%3E()","k":"3"},{"p":"ecoparasite.input","c":"RawData","l":"RawData(ArrayList)","u":"%3Cinit%3E(java.util.ArrayList)","k":"3"},{"p":"ecoparasite.input","c":"RawDataOverflow","l":"RawDataOverflow(int, int)","u":"%3Cinit%3E(int,int)","k":"3"},{"p":"ecoparasite.input","c":"InputFactory","l":"readData(String)","u":"readData(java.lang.String)","k":"6"},{"p":"ecoparasite.input","c":"InputFactory","l":"readData(String, String)","u":"readData(java.lang.String,java.lang.String)","k":"6"},{"p":"ecoparasite.population","c":"PopulationArgs","l":"setAbondance(Double)","u":"setAbondance(java.lang.Double)"},{"p":"ecoparasite.poisson","c":"Poisson","l":"setFishParts(HashSet)","u":"setFishParts(java.util.HashSet)"},{"p":"ecoparasite.population","c":"PopulationArgs","l":"setIc(PopulationArgInterval)","u":"setIc(ecoparasite.population.PopulationArgInterval)"},{"p":"ecoparasite.poisson","c":"PartiePoisson","l":"setInfestation(Double)","u":"setInfestation(java.lang.Double)"},{"p":"ecoparasite.poisson","c":"Poisson","l":"setInfestation(Double)","u":"setInfestation(java.lang.Double)"},{"p":"ecoparasite.population","c":"PopulationArgs","l":"setIntensity(Double)","u":"setIntensity(java.lang.Double)"},{"p":"ecoparasite.population","c":"PopulationArgs","l":"setLength(PopulationArgInterval)","u":"setLength(ecoparasite.population.PopulationArgInterval)"},{"p":"ecoparasite.poisson","c":"PartiePoisson","l":"setName(String)","u":"setName(java.lang.String)"},{"p":"ecoparasite.population","c":"PopulationArgs","l":"setNumber(int)"},{"p":"ecoparasite.population","c":"Population","l":"setPerYear(HashMap)","u":"setPerYear(java.util.HashMap)"},{"p":"ecoparasite.population","c":"PopulationArgs","l":"setPrevalence(PopulationArgInterval)","u":"setPrevalence(ecoparasite.population.PopulationArgInterval)"},{"p":"ecoparasite.population","c":"Population","l":"setTotal(PopulationArgs)","u":"setTotal(ecoparasite.population.PopulationArgs)"},{"p":"ecoparasite.population","c":"PopulationArgs","l":"setWidth(PopulationArgInterval)","u":"setWidth(ecoparasite.population.PopulationArgInterval)"},{"p":"ecoparasite.population","c":"PopulationArgs","l":"setZone(String)","u":"setZone(java.lang.String)"},{"p":"ecoparasite.input","c":"RawData","l":"toString()"},{"p":"ecoparasite.poisson","c":"Poisson","l":"toString()"},{"p":"ecoparasite.population","c":"Population","l":"toString()"},{"p":"ecoparasite.population","c":"PopulationArgs","l":"toString()"},{"p":"ecoparasite.population","c":"PopulationArgInterval","l":"transformToDouble()"}];updateSearchResults();
\ No newline at end of file
+memberSearchIndex = [{"p":"ecoparasite","c":"Application","l":"Application()","u":"%3Cinit%3E()","k":"3"},{"p":"ecoparasite.svg.elements","c":"ElementsFactory","l":"AXES_TEXT_SIZE","k":"2"},{"p":"ecoparasite.svg","c":"SVGBuilder","l":"buildAll(String, String, HashSet, double, double)","u":"buildAll(java.lang.String,java.lang.String,java.util.HashSet,double,double)"},{"p":"ecoparasite.svg","c":"SVGBuilder","l":"buildAxes(String, String)","u":"buildAxes(java.lang.String,java.lang.String)"},{"p":"ecoparasite.input","c":"InputFactory","l":"buildDataPath(String)","u":"buildDataPath(java.lang.String)","k":"6"},{"p":"ecoparasite.svg","c":"SVGBuilder","l":"buildPoints(HashSet)","u":"buildPoints(java.util.HashSet)"},{"p":"ecoparasite.svg","c":"SVGBuilder","l":"buildRegression(double, 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diff --git a/Doc/overview-summary.html b/Doc/overview-summary.html
index 1acdfd7..2cf3d31 100644
--- a/Doc/overview-summary.html
+++ b/Doc/overview-summary.html
@@ -1,11 +1,11 @@
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+
Generated Documentation (Untitled)
Class Hierarchy
ecoparasite.input , ecoparasite.nettoyage , ecoparasite.poisson , ecoparasite.population ecoparasite.population , ecoparasite.representation , ecoparasite.svg , ecoparasite.svg.elements
Class Hierarchy
@@ -66,8 +69,16 @@ loadScripts(document, 'script');
diff --git a/Doc/package-search-index.js b/Doc/package-search-index.js
index e280548..b4ca03f 100644
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diff --git a/Doc/search.html b/Doc/search.html
index b9c526b..9a2e00e 100644
--- a/Doc/search.html
+++ b/Doc/search.html
@@ -1,11 +1,11 @@
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+
Search
Serialized Form
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+
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diff --git a/Doc/type-search-index.js b/Doc/type-search-index.js
index 7312b14..3f7bbe3 100644
--- a/Doc/type-search-index.js
+++ b/Doc/type-search-index.js
@@ -1 +1 @@
-typeSearchIndex = [{"l":"All Classes and Interfaces","u":"allclasses-index.html","k":"18"},{"p":"ecoparasite","l":"Application"},{"p":"ecoparasite.completion","l":"Completion"},{"p":"ecoparasite.input","l":"DataParsing","k":"10"},{"p":"ecoparasite.input","l":"InputFactory"},{"p":"ecoparasite.input","l":"InputFileException","k":"13"},{"p":"ecoparasite.input","l":"InvalidParsingException","k":"13"},{"p":"ecoparasite","l":"LectureEval"},{"p":"ecoparasite.poisson","l":"Mackerel"},{"p":"ecoparasite.poisson","l":"MackerelSerra"},{"p":"ecoparasite.poisson","l":"Merlu"},{"p":"ecoparasite.nettoyage","l":"Nettoyage"},{"p":"ecoparasite.poisson","l":"PartiePoisson"},{"p":"ecoparasite.poisson","l":"Poisson"},{"p":"ecoparasite.population","l":"Population"},{"p":"ecoparasite.population","l":"PopulationArgInterval"},{"p":"ecoparasite.population","l":"PopulationArgs"},{"p":"ecoparasite.population","l":"PopulationParsing"},{"p":"ecoparasite.input","l":"RawData"},{"p":"ecoparasite.input","l":"RawDataOverflow","k":"13"}];updateSearchResults();
\ No newline at end of file
+typeSearchIndex = [{"l":"All Classes and Interfaces","u":"allclasses-index.html","k":"18"},{"p":"ecoparasite","l":"Application"},{"p":"ecoparasite.svg.elements","l":"Circle"},{"p":"ecoparasite.completion","l":"Completion"},{"p":"ecoparasite.svg","l":"Coordonnees"},{"p":"ecoparasite.input","l":"DataParsing","k":"10"},{"p":"ecoparasite.svg.elements","l":"Element"},{"p":"ecoparasite.svg.elements","l":"ElementsFactory"},{"p":"ecoparasite.svg","l":"IncorrectAxesPointsException","k":"13"},{"p":"ecoparasite.input","l":"InputFactory"},{"p":"ecoparasite.input","l":"InputFileException","k":"13"},{"p":"ecoparasite.input","l":"InvalidParsingException","k":"13"},{"p":"ecoparasite.svg.elements","l":"Line"},{"p":"ecoparasite.poisson","l":"Mackerel"},{"p":"ecoparasite.poisson","l":"MackerelSerra"},{"p":"ecoparasite.poisson","l":"Merlu"},{"p":"ecoparasite.nettoyage","l":"Nettoyage"},{"p":"ecoparasite.poisson","l":"PartiePoisson"},{"p":"ecoparasite.poisson","l":"Poisson"},{"p":"ecoparasite.population","l":"Population"},{"p":"ecoparasite.population","l":"PopulationArgInterval"},{"p":"ecoparasite.population","l":"PopulationArgs"},{"p":"ecoparasite.population","l":"PopulationParsing"},{"p":"ecoparasite.input","l":"RawData"},{"p":"ecoparasite.input","l":"RawDataOverflow","k":"13"},{"p":"ecoparasite.svg","l":"SVGBuilder"},{"p":"ecoparasite.svg","l":"SVGFactory"},{"p":"ecoparasite.svg","l":"SVGResizing"},{"p":"ecoparasite.svg.elements","l":"Text"},{"p":"ecoparasite.representation","l":"ValeursXY"}];updateSearchResults();
\ No newline at end of file
diff --git a/UML/classes.png b/UML/classes.png
index 89b5e01..be03c1f 100644
Binary files a/UML/classes.png and b/UML/classes.png differ
diff --git a/UML/classes.puml b/UML/classes.puml
index 0a6e614..9607972 100644
--- a/UML/classes.puml
+++ b/UML/classes.puml
@@ -130,14 +130,11 @@ namespace ecoparasite {
+ {static} nettoieColumns()
}
}
-
- namespace ecoparasite.representation {
class ValeursXY {
- double x
- double y
+ {static} HashSet convertToXY()
}
- }
namespace ecoparasite.svg {
class SVGFactory {
@@ -182,9 +179,6 @@ namespace ecoparasite {
+ {static} roundMax()
}
- exception IncorrectAxesPointsException {
- }
-
SVGBuilder o--> SVGResizing : - resizer
}
@@ -223,6 +217,5 @@ namespace ecoparasite {
}
Exception <|-- InputFileException
Exception <|-- RawDataOverflow
-Exception <|-- IncorrectAxesPointsException
@enduml
\ No newline at end of file
diff --git a/data/Combinés/ParasitesPeru2021.csv b/data/Combinés/ParasitesPeru2021.csv
index 694536b..2c4f5b2 100644
--- a/data/Combinés/ParasitesPeru2021.csv
+++ b/data/Combinés/ParasitesPeru2021.csv
@@ -3,27 +3,27 @@ Trachurus symmetricus murphyi,N,105,40,30,35
Trachurus symmetricus murphyi,Longueur moyenne ± SD (cm),34.83 ± 2.32,34.5 ± 2.29,35.5 ± 2.3,34.5 ± 2.2
Trachurus symmetricus murphyi,Poids moyen ± SD (g),325.78 ± 54.71,318.5 ± 52.71,341.93 ± 56.28,319.98 ± 52.08
Trachurus symmetricus murphyi,Prévalence (%),64.76,62.5,70,62.86
-Trachurus symmetricus murphyi,IC 95%,55.47-74.05,46.82-78.18,52.60-87.40,46.02-79.70
+Trachurus symmetricus murphyi,IC 95%,55.47 - 74.05,46.82 - 78.18,52.60 - 87.40,46.02 - 79.70
Trachurus symmetricus murphyi,Intensité moyenne (étendue),4.77 (1-10),4.72 (1-10),4.67 (1-9),4.95 (2-10)
Trachurus symmetricus murphyi,Abondance moyenne,3.1,2.95,3.27,3.11
Merluccius gayi peruanus,N,85,28,32,25
Merluccius gayi peruanus,Longueur moyenne ± SD (cm),39.17 ± 2.64,38.5 ± 2.17,39.5 ± 1.87,39.3 ± 2.59
Merluccius gayi peruanus,Poids moyen ± SD (g),459.17 ± 95.28,431.02 ± 73.98,465.09 ± 67.51,459.17 ± 92.59
Merluccius gayi peruanus,Prévalence (%),77.65,78.57,75,80
-Merluccius gayi peruanus,IC 95%,68.61-86.69,62.37-94.77,59.14-90.86,63.15-96.85
+Merluccius gayi peruanus,IC 95%,68.61 - 86.69,62.37 - 94.77,59.14 - 90.86,63.15 - 96.85
Merluccius gayi peruanus,Intensité moyenne (étendue),3.7 (1-7),3.86 (1-7),3.83 (1-7),3.35 (2-7)
Merluccius gayi peruanus,Abondance moyenne,2.87,3.04,2.88,2.68
Seriolella violacea,N,75,26,24,25
Seriolella violacea,Longueur moyenne ± SD (cm),41 ± 3.89,39 ± 2.58,41.5 ± 2.87,42.5 ± 2.67
Seriolella violacea,Poids moyen ± SD (g),3895 ± 369.97,3705 ± 245.29,3942.5 ± 272.87,4037.5 ± 271.96
Seriolella violacea,Prévalence (%),22.67,26.92,16.67,24
-Seriolella violacea,IC 95%,12.97-32.36,8.65-45.19,0.59-32.74,6.00-41.99
+Seriolella violacea,IC 95%,12.97 - 32.36,8.65 - 45.19,0.59 - 32.74,6.00 - 41.99
Seriolella violacea,Intensité moyenne (étendue),9.88 (1-48),6 (1-10),8.5 (7-10),15.33 (7-48)
Seriolella violacea,Abondance moyenne,2.24,1.62,1.42,0
Scomber japonicus peruanus,N,100,37,33,30
Scomber japonicus peruanus,Longueur moyenne ± SD (cm),33 ± 2.74,32.5 ± 2.31,32.5 ± 1.71,33.5 ± 2.05
Scomber japonicus peruanus,Poids moyen ± SD (g),315.58 ± 84.15,309.18 ± 62.42,308.68 ± 46.46,336.98 ± 64.81
Scomber japonicus peruanus,Prévalence (%),45,48.65,45.45,40
-Scomber japonicus peruanus,IC 95%,35.08-54.92,31.75-65.54,27.52-63.38,21.39-58.61
+Scomber japonicus peruanus,IC 95%,35.08 - 54.92,31.75 - 65.54,27.52 - 63.38,21.39 - 58.61
Scomber japonicus peruanus,Intensité moyenne (étendue),4.91 (1-9),4.72 (1-9),4.87 (2-8),5.25 (2-9)
Scomber japonicus peruanus,Abondance moyenne,2.21,2.3,2.21,2.1
diff --git a/src/ecoparasite/Application.java b/src/ecoparasite/Application.java
index 27a1169..3bfb496 100644
--- a/src/ecoparasite/Application.java
+++ b/src/ecoparasite/Application.java
@@ -6,25 +6,220 @@ import ecoparasite.input.InputFileException;
import ecoparasite.input.RawData;
import ecoparasite.input.RawDataOverflow;
import ecoparasite.nettoyage.Nettoyage;
+import ecoparasite.poisson.Mackerel;
import ecoparasite.poisson.MackerelSerra;
+import ecoparasite.poisson.Merlu;
import ecoparasite.poisson.Poisson;
+import ecoparasite.population.Population;
+import ecoparasite.population.PopulationArgInterval;
+import ecoparasite.population.PopulationParsing;
import ecoparasite.representation.ValeursXY;
import ecoparasite.svg.IncorrectAxesPointsException;
import ecoparasite.svg.SVGBuilder;
import ecoparasite.svg.SVGFactory;
import ecoparasite.svg.elements.Element;
-import java.util.ArrayList;
-import java.util.HashMap;
-import java.util.HashSet;
+import java.io.File;
+import java.util.*;
import java.util.function.BiConsumer;
import java.util.function.Function;
public class Application {
- public static void main(String[] args) throws InputFileException, RawDataOverflow {
+ static final String[] VALID_FILES = {"Campagne/mackerel.97442.csv", "Campagne/merlu2018_75164.csv","Combinés/ParasitesPeru2021.csv", "test2.csv"};
- RawData rawMackerel = InputFactory.readData("test2.csv", ",");
+ public static void validFileName(File dir, HashSet listeName){
+
+ File[] liste = dir.listFiles();
+
+ for (File item : liste) {
+ if (!item.isDirectory()){
+ listeName.add(item.getName());
+ } else {
+ validFileName(new File(dir.getName()+ "/" + item.getName()), listeName);
+ }
+ }
+
+ }
+
+ public static String validFile(){
+
+ Scanner sc = new Scanner(System.in);
+ String name = "";
+ boolean isValid = false;
+
+ /*
+ File dir = new File("data");
+
+ HashSet listeName = new HashSet<>();
+
+ Application.validFileName(dir,listeName);
+ */
+
+ System.out.println( "Liste des fichiers valides:" );
+ for (String validFile : VALID_FILES) {
+ System.out.print(validFile + " ");
+ }
+ System.out.println();
+
+ while (!isValid) {
+ System.out.println("Veuillez rentrez le nom du fichier :");
+ name = sc.nextLine();
+
+ for (int i = 0; i < VALID_FILES.length; i++) {
+ if (name.contains(VALID_FILES[i])){
+ isValid = true;
+ break;
+ }
+ }
+ }
+
+ return name;
+ }
+
+ public static void MackerelFile(String name) throws InputFileException, RawDataOverflow {
+
+ RawData rawMackerel = InputFactory.readData(name);
+
+ HashSet mackerelSet = Mackerel.parse(rawMackerel);
+
+ System.out.println( "Avant le nettoyage et complétion");
+ System.out.println( mackerelSet );
+
+ Function getLength = Poisson::getLength;
+ Function getInfes = Poisson::getInfestation;
+ BiConsumer setInfes = Poisson::setInfestation;
+
+ mackerelSet = Nettoyage.nettoieColumns( mackerelSet, getInfes, setInfes, false );
+ mackerelSet = Completion.completeColumnsLinear( mackerelSet, getLength, getInfes, setInfes );
+
+ System.out.println( "Après le nettoyage et complétion");
+ System.out.println( mackerelSet );
+
+ HashSet mackerelXY = ValeursXY.convertToXY( mackerelSet, getLength, getInfes );
+ HashMap> axes = SVGBuilder.calcPointAxes( mackerelXY );
+ System.out.println( axes );
+
+ SVGBuilder axesInstance;
+ try {
+ axesInstance = new SVGBuilder(axes);
+ } catch (IncorrectAxesPointsException e) {
+ System.out.println( "Mauvais format communiqué" );
+ return;
+ }
+
+ // Sauvegarde pour plus tard.
+ double[] ABCoef = Completion.getLinearCoef(mackerelSet, getLength, getInfes);
+
+ ArrayList SVGElements = axesInstance.buildAll( "Length (mm)", "Taux d'infestation", mackerelXY, ABCoef[0], ABCoef[1] );
+ SVGFactory.createSVG( SVGElements );
+ }
+
+ public static void MerluFile(String name) throws InputFileException, RawDataOverflow {
+
+ RawData rawMerlu = InputFactory.readData(name);
+
+ HashSet merluSet = Merlu.parse(rawMerlu);
+
+ System.out.println( "Avant le nettoyage et complétion");
+ System.out.println( merluSet );
+
+ Function getLength = Poisson::getLength;
+ Function getInfes = Poisson::getInfestation;
+ BiConsumer setInfes = Poisson::setInfestation;
+
+ merluSet = Nettoyage.nettoieColumns( merluSet, getInfes, setInfes, false );
+ merluSet = Completion.completeColumnsLinear( merluSet, getLength, getInfes, setInfes );
+
+ System.out.println( "Après le nettoyage et complétion");
+ System.out.println( merluSet );
+
+ HashSet merluXY = ValeursXY.convertToXY( merluSet, getLength, getInfes );
+ HashMap> axes = SVGBuilder.calcPointAxes( merluXY );
+ System.out.println( axes );
+
+ SVGBuilder axesInstance;
+ try {
+ axesInstance = new SVGBuilder(axes);
+ } catch (IncorrectAxesPointsException e) {
+ System.out.println( "Mauvais format communiqué" );
+ return;
+ }
+
+ // Sauvegarde pour plus tard.
+ double[] ABCoef = Completion.getLinearCoef(merluSet, getLength, getInfes);
+
+ ArrayList SVGElements = axesInstance.buildAll( "Length (mm)", "Taux d'infestation", merluXY, ABCoef[0], ABCoef[1] );
+ SVGFactory.createSVG( SVGElements );
+ }
+
+ public static void PopPeru(String name) throws InputFileException,RawDataOverflow{
+
+ RawData popRaw; int index;
+ try {
+ popRaw = InputFactory.readData(name , "," );
+ } catch(InputFileException e) {
+ System.out.println(e.getMessage());
+ return;
+ }
+
+ HashSet popSet = PopulationParsing.parseParasitesPeru(popRaw);
+
+ index = 1;
+ System.out.println( "Avant complétion et nettoyage de la masse" );
+ for( Population p: popSet){
+ System.out.println(String.valueOf(index++) + p);
+ }
+
+ // Nettoyage de la taille.
+ Function getLength = population -> {
+ return population.getTotal().getLength() != null ? population.getTotal().getLength().transformToDouble() : null;
+ };
+ BiConsumer setLength = (population, aDouble) -> {
+ population.getTotal().setLength(aDouble != null ? new PopulationArgInterval(aDouble,aDouble) : null);
+ };
+
+ Function getInfes = population -> {
+ return population.getTotal().getAbondance() != null ? population.getTotal().getAbondance() : null;
+ };
+
+ popSet = Nettoyage.nettoieColumns(popSet, getLength, setLength, false);
+ System.out.println("Après nettoyage de la masse");
+ index = 1;
+ for( Population p: popSet){
+ System.out.println(String.valueOf(index++) + p);
+ }
+
+ // Complétion de la masse.
+ popSet = Completion.completeColumnsMoyenne(popSet, getLength, setLength);
+ System.out.println("Après complétion de la masse");
+
+ index = 1;
+ for( Population p: popSet){
+ System.out.println(String.valueOf(index++) + p);
+ }
+
+ HashSet popXY = ValeursXY.convertToXY( popSet, getLength, getInfes );
+ HashMap> axes = SVGBuilder.calcPointAxes( popXY );
+ System.out.println( axes );
+
+ SVGBuilder axesInstance;
+ try {
+ axesInstance = new SVGBuilder(axes);
+ } catch (IncorrectAxesPointsException e) {
+ System.out.println( "Mauvais format communiqué" );
+ return;
+ }
+
+ double[] ABCoef = Completion.getLinearCoef(popSet, getLength, getInfes);
+
+ ArrayList elements = axesInstance.buildAll( "Taille en mm", "Abondance", popXY, ABCoef[0], ABCoef[1] );
+ SVGFactory.createSVG(elements);
+ }
+
+ public static void test2Render(String name) throws InputFileException,RawDataOverflow{
+
+ RawData rawMackerel = InputFactory.readData(name, ",");
HashSet mackerelSet = MackerelSerra.parse(rawMackerel);
@@ -67,4 +262,26 @@ public class Application {
SVGFactory.createSVG( SVGElements );
}
+
+ public static void main(String[] args) {
+
+ String nameFile = Application.validFile();
+
+ try {
+ if (nameFile.contains("mackerel")) {
+ MackerelFile(nameFile);
+ } else if (nameFile.contains("merlu")) {
+ MerluFile(nameFile);
+ } else if (nameFile.contains("Peru")) {
+ PopPeru(nameFile);
+ } else if (nameFile.contains("test2")) {
+ test2Render(nameFile);
+ }
+ } catch ( InputFileException e ){
+ System.out.println( e.getMessage() );
+ } catch ( RawDataOverflow e ){
+ System.out.println( e.getMessage() );
+ }
+
+ }
}
\ No newline at end of file
diff --git a/src/ecoparasite/completion/Completion.java b/src/ecoparasite/completion/Completion.java
index 4067f0f..ac0f6c7 100644
--- a/src/ecoparasite/completion/Completion.java
+++ b/src/ecoparasite/completion/Completion.java
@@ -1,14 +1,6 @@
package ecoparasite.completion;
-import ecoparasite.input.InputFactory;
-import ecoparasite.input.InputFileException;
-import ecoparasite.input.RawData;
-import ecoparasite.input.RawDataOverflow;
-import ecoparasite.poisson.Mackerel;
-import ecoparasite.poisson.Poisson;
-
import java.util.HashSet;
-import java.util.concurrent.Callable;
import java.util.function.*;
/**
diff --git a/src/ecoparasite/input/DataParsing.java b/src/ecoparasite/input/DataParsing.java
index dc6a0de..fc40cc4 100644
--- a/src/ecoparasite/input/DataParsing.java
+++ b/src/ecoparasite/input/DataParsing.java
@@ -1,7 +1,5 @@
package ecoparasite.input;
-import ecoparasite.poisson.Poisson;
-
import java.util.HashSet;
/**
diff --git a/src/ecoparasite/input/InputFactory.java b/src/ecoparasite/input/InputFactory.java
index b188261..c451adb 100644
--- a/src/ecoparasite/input/InputFactory.java
+++ b/src/ecoparasite/input/InputFactory.java
@@ -2,14 +2,11 @@ package ecoparasite.input;
import java.io.BufferedReader;
import java.io.IOException;
-import java.lang.reflect.Array;
import java.nio.charset.StandardCharsets;
import java.nio.file.Files;
import java.nio.file.Path;
import java.nio.file.Paths;
import java.util.ArrayList;
-import java.util.Arrays;
-import java.util.HashMap;
/**
* Permet de manipuler les fichiers CSV, de les lire et d'en créer des objets RawData pour ces données brutes.
diff --git a/src/ecoparasite/nettoyage/Nettoyage.java b/src/ecoparasite/nettoyage/Nettoyage.java
index 058a903..ee76cca 100644
--- a/src/ecoparasite/nettoyage/Nettoyage.java
+++ b/src/ecoparasite/nettoyage/Nettoyage.java
@@ -1,8 +1,5 @@
package ecoparasite.nettoyage;
-import ecoparasite.completion.Completion;
-import ecoparasite.poisson.Poisson;
-
import java.util.ArrayList;
import java.util.Collections;
import java.util.HashSet;
@@ -40,7 +37,7 @@ public class Nettoyage {
int quartIndex = array.size()/4;
Double firstQuart = array.get(quartIndex);
Double thirdQuart = array.get(quartIndex *3);
- Double IQR = thirdQuart - firstQuart;
+ double IQR = thirdQuart - firstQuart;
for(T item : list){
if( getValue.apply(item) == null || getValue.apply(item).doubleValue() < firstQuart - (IQR * 1.5) || getValue.apply(item).doubleValue() > thirdQuart + (IQR * 1.5) || ( !allowNegative && getValue.apply(item).doubleValue() < 0 ) ){
diff --git a/src/ecoparasite/population/Population.java b/src/ecoparasite/population/Population.java
index 6fc7b01..d42ea60 100644
--- a/src/ecoparasite/population/Population.java
+++ b/src/ecoparasite/population/Population.java
@@ -98,7 +98,7 @@ public class Population implements DataParsing {
public static HashSet parse(RawData data, int parseTypeId ) throws RawDataOverflow, InvalidParsingException {
switch (parseTypeId) {
case 1:
- return PopulationParsing.parseParasitesPeru(data);
+ return PopulationParsing.parseParasitesPeru(data); // Parsing de la population du fichier ParasitesPeru2021.csv
default:
throw new InvalidParsingException(parseTypeId, Population.class.getSimpleName() );
}
diff --git a/src/ecoparasite/svg/SVGFactory.java b/src/ecoparasite/svg/SVGFactory.java
index d3615cd..2e8ce39 100644
--- a/src/ecoparasite/svg/SVGFactory.java
+++ b/src/ecoparasite/svg/SVGFactory.java
@@ -1,15 +1,11 @@
package ecoparasite.svg;
-import ecoparasite.representation.ValeursXY;
import ecoparasite.svg.elements.Element;
import ecoparasite.svg.elements.ElementsFactory;
-import javax.lang.model.util.ElementScanner14;
import java.io.FileWriter;
import java.io.IOException;
import java.util.ArrayList;
-import java.util.HashMap;
-import java.util.HashSet;
import java.util.UUID;
public class SVGFactory {
@@ -101,7 +97,7 @@ public class SVGFactory {
// close the writer
writer.close();
- System.out.println("Successfully wrote text to file.");
+ System.out.println("Successfully wrote text to file (" + filename + ")" );
}
diff --git a/src/ecoparasite/svg/elements/ElementsFactory.java b/src/ecoparasite/svg/elements/ElementsFactory.java
index 200366b..f0c7d40 100644
--- a/src/ecoparasite/svg/elements/ElementsFactory.java
+++ b/src/ecoparasite/svg/elements/ElementsFactory.java
@@ -1,10 +1,5 @@
package ecoparasite.svg.elements;
-import ecoparasite.svg.Coordonnees;
-
-import java.util.ArrayList;
-import java.util.HashSet;
-
/**
* Contient divers éléments utiles pour les fichiers SVG.
*/
diff --git a/tests/ecoparasite/completion/CompletionTest.java b/tests/ecoparasite/completion/CompletionTest.java
index 683d497..16527fd 100644
--- a/tests/ecoparasite/completion/CompletionTest.java
+++ b/tests/ecoparasite/completion/CompletionTest.java
@@ -7,14 +7,11 @@ import ecoparasite.input.RawDataOverflow;
import ecoparasite.nettoyage.Nettoyage;
import ecoparasite.poisson.Mackerel;
import ecoparasite.poisson.Poisson;
-import org.junit.jupiter.api.Test;
import java.util.HashSet;
import java.util.function.BiConsumer;
import java.util.function.Function;
-import static org.junit.jupiter.api.Assertions.*;
-
class CompletionTest {
@org.junit.jupiter.api.Test
diff --git a/tests/ecoparasite/input/InputFactoryTest.java b/tests/ecoparasite/input/InputFactoryTest.java
index 87dd2d6..7e59211 100644
--- a/tests/ecoparasite/input/InputFactoryTest.java
+++ b/tests/ecoparasite/input/InputFactoryTest.java
@@ -1,12 +1,10 @@
package ecoparasite.input;
-import static ecoparasite.input.InputFactory.*;
import static org.junit.jupiter.api.Assertions.assertArrayEquals;
import ecoparasite.input.InputFactory;
import ecoparasite.input.InputFileException;
import ecoparasite.input.RawData;
-import org.junit.jupiter.api.Test;
class InputFactoryTest {
diff --git a/tests/ecoparasite/nettoyage/NettoyageTest.java b/tests/ecoparasite/nettoyage/NettoyageTest.java
index f4695d4..1f94bd7 100644
--- a/tests/ecoparasite/nettoyage/NettoyageTest.java
+++ b/tests/ecoparasite/nettoyage/NettoyageTest.java
@@ -5,10 +5,8 @@ import ecoparasite.input.InputFactory;
import ecoparasite.input.InputFileException;
import ecoparasite.input.RawData;
import ecoparasite.input.RawDataOverflow;
-import ecoparasite.poisson.Mackerel;
import ecoparasite.poisson.MackerelSerra;
import ecoparasite.poisson.Poisson;
-import org.junit.jupiter.api.Test;
import java.util.HashSet;
import java.util.function.BiConsumer;
@@ -32,7 +30,7 @@ class NettoyageTest {
System.out.println(testp);
- testp = Nettoyage.nettoieColumnsMoyenne( testp, getInfes, setInfes );
+ testp = Nettoyage.nettoieColumns( testp, getInfes, setInfes );
System.out.println(testp);
}
diff --git a/tests/ecoparasite/poisson/MerluTest.java b/tests/ecoparasite/poisson/MerluTest.java
index 79545d8..108fab5 100644
--- a/tests/ecoparasite/poisson/MerluTest.java
+++ b/tests/ecoparasite/poisson/MerluTest.java
@@ -8,8 +8,6 @@ import org.junit.jupiter.api.Test;
import java.util.HashSet;
-import static org.junit.jupiter.api.Assertions.*;
-
class MerluTest {
@Test
diff --git a/tests/ecoparasite/population/PopulationParsingTest.java b/tests/ecoparasite/population/PopulationParsingTest.java
index 0b7a904..d6d7452 100644
--- a/tests/ecoparasite/population/PopulationParsingTest.java
+++ b/tests/ecoparasite/population/PopulationParsingTest.java
@@ -8,8 +8,6 @@ import org.junit.jupiter.api.Test;
import java.util.HashSet;
-import static org.junit.jupiter.api.Assertions.*;
-
class PopulationParsingTest {
@Test
diff --git a/tests/ecoparasite/svg/SVGFactoryTest.java b/tests/ecoparasite/svg/SVGFactoryTest.java
index 73fe99b..7fb2ce1 100644
--- a/tests/ecoparasite/svg/SVGFactoryTest.java
+++ b/tests/ecoparasite/svg/SVGFactoryTest.java
@@ -1,15 +1,20 @@
package ecoparasite.svg;
+import ecoparasite.svg.elements.Element;
import ecoparasite.svg.elements.ElementsFactory;
+import ecoparasite.svg.elements.Text;
import org.junit.jupiter.api.Test;
-import static org.junit.jupiter.api.Assertions.*;
+import java.util.ArrayList;
class SVGFactoryTest {
@Test
- public void generateSVGAxes(){
- // SVGFactory.createSVG( ElementsFactory.SVGAxes() );
+ void generateTestSVG(){
+ Element t = new Text( new Coordonnees(100,100), "Ceci est un test", ElementsFactory.COLOR_BLACK, 48 );
+ ArrayList elements = new ArrayList<>();
+ elements.add(t);
+ SVGFactory.createSVG( elements, "test" );
}
}
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