Benjamin/ecoparasite-data-analyse
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Update doc and fix weak problems

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This commit is contained in:
Benjamin
2026-04-29 11:54:29 +02:00
parent 92f9a3eca4
commit ed259faa65
87 changed files with 3843 additions and 102 deletions
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2
src/ecoparasite/Application.java
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@@ -180,7 +180,7 @@ public class Application {
};
Function<Population,Double> getInfes = population -> {
return population.getTotal().getAbondance() != null ? population.getTotal().getPrevalence().transformToDouble() : null;
return population.getTotal().getAbondance() != null ? population.getTotal().getAbondance() : null;
};
popSet = Nettoyage.nettoieColumns(popSet, getLength, setLength, false);

8
src/ecoparasite/completion/Completion.java
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@@ -1,14 +1,6 @@
package ecoparasite.completion;
import ecoparasite.input.InputFactory;
import ecoparasite.input.InputFileException;
import ecoparasite.input.RawData;
import ecoparasite.input.RawDataOverflow;
import ecoparasite.poisson.Mackerel;
import ecoparasite.poisson.Poisson;
import java.util.HashSet;
import java.util.concurrent.Callable;
import java.util.function.*;
/**

2
src/ecoparasite/input/DataParsing.java
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@@ -1,7 +1,5 @@
package ecoparasite.input;
import ecoparasite.poisson.Poisson;
import java.util.HashSet;
/**

3
src/ecoparasite/input/InputFactory.java
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@@ -2,14 +2,11 @@ package ecoparasite.input;
import java.io.BufferedReader;
import java.io.IOException;
import java.lang.reflect.Array;
import java.nio.charset.StandardCharsets;
import java.nio.file.Files;
import java.nio.file.Path;
import java.nio.file.Paths;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.HashMap;
/**
* Permet de manipuler les fichiers CSV, de les lire et d'en créer des objets RawData pour ces données brutes.

5
src/ecoparasite/nettoyage/Nettoyage.java
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@@ -1,8 +1,5 @@
package ecoparasite.nettoyage;
import ecoparasite.completion.Completion;
import ecoparasite.poisson.Poisson;
import java.util.ArrayList;
import java.util.Collections;
import java.util.HashSet;
@@ -40,7 +37,7 @@ public class Nettoyage {
int quartIndex = array.size()/4;
Double firstQuart = array.get(quartIndex);
Double thirdQuart = array.get(quartIndex *3);
Double IQR = thirdQuart - firstQuart;
double IQR = thirdQuart - firstQuart;
for(T item : list){
if( getValue.apply(item) == null || getValue.apply(item).doubleValue() < firstQuart - (IQR * 1.5) || getValue.apply(item).doubleValue() > thirdQuart + (IQR * 1.5) || ( !allowNegative && getValue.apply(item).doubleValue() < 0 ) ){

2
src/ecoparasite/population/Population.java
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@@ -98,7 +98,7 @@ public class Population implements DataParsing {
public static HashSet<Population> parse(RawData data, int parseTypeId ) throws RawDataOverflow, InvalidParsingException {
switch (parseTypeId) {
case 1:
return PopulationParsing.parseParasitesPeru(data);
return PopulationParsing.parseParasitesPeru(data); // Parsing de la population du fichier ParasitesPeru2021.csv
default:
throw new InvalidParsingException(parseTypeId, Population.class.getSimpleName() );
}

4
src/ecoparasite/svg/SVGFactory.java
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@@ -1,15 +1,11 @@
package ecoparasite.svg;
import ecoparasite.representation.ValeursXY;
import ecoparasite.svg.elements.Element;
import ecoparasite.svg.elements.ElementsFactory;
import javax.lang.model.util.ElementScanner14;
import java.io.FileWriter;
import java.io.IOException;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.HashSet;
import java.util.UUID;
public class SVGFactory {

5
src/ecoparasite/svg/elements/ElementsFactory.java
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@@ -1,10 +1,5 @@
package ecoparasite.svg.elements;
import ecoparasite.svg.Coordonnees;
import java.util.ArrayList;
import java.util.HashSet;
/**
* Contient divers éléments utiles pour les fichiers SVG.
*/