1 line
15 KiB
CSV
1 line
15 KiB
CSV
data_file_name,column_name,column_description
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anisakid_data.csv,ID,unique ID for each study retrieved from Web of Science
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anisakid_data.csv,E_Fiorenza,whether Evan Fiorenza judged that the study should be included based on information contained in the study's title
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anisakid_data.csv,K_Dobkowski,whether Katie Dobkowski judged that the study should be included based on information contained in the study's title
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anisakid_data.csv,C_Wendt,whether Catrin Wendt judged that the study should be included based on information contained in the study's title
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anisakid_data.csv,Include_title,judgment about whether the study should be included based on consensus among co-authors on information contained in the study's title
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anisakid_data.csv,EF_Abs,whether Evan Fiorenza judged that the study should be included based on information contained in the study's abstract
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anisakid_data.csv,KD_Abs,whether Katie Dobkowski judged that the study should be included based on information contained in the study's abstract
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anisakid_data.csv,CW_Abs,whether Catrin Wendt judged that the study should be included based on information contained in the study's abstract
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anisakid_data.csv,Notes,"notes from Evan Fiorenza (EF), Katie Dobkowski (KD), and Catrin Wendt (CW) regarding reasoning for inclusion/exclusion of studies"
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anisakid_data.csv,Include_abstract,judgment about whether the study should be included based on consensus among co-authors on information contained in the study's abstract
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anisakid_data.csv,Method_Counting_parasites,"the method that this study used to count parasites (candling, microscopy, digestion, UV, or a combination of these)"
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anisakid_data.csv,Portion_of_Body,"the portion of the fish or invertebrates body that was examined for parasites (alimentary tract, fillet, viscera, whole animal)"
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anisakid_data.csv,Geographic_Location_Name,name of the site of collection given in the study
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anisakid_data.csv,Latitude_decimaldegrees,latitude of collection site in decimal degrees
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anisakid_data.csv,Longitude_decimaldegrees,longitude of collection site in decimal degrees
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anisakid_data.csv,Depth_m,"depth of collection in meters, if given in the study"
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anisakid_data.csv,Depth_min_m,"minimum depth of collection in meters, if given in the study"
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anisakid_data.csv,Depth_max_m,"maximum depth of collection in meters, if given in the study"
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anisakid_data.csv,Month_season_collection,month or month range in which the sample was collected
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anisakid_data.csv,Year_collection,year of collection
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anisakid_data.csv,Year_collection_min,"minimum year of collection, if the study gives a range of years"
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anisakid_data.csv,Year_collection_max,"maximum year of collection, if the study gives a range of years"
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anisakid_data.csv,Length_cm,"mean standard length of the fish that make up the sample, in cm"
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anisakid_data.csv,Length_SD_cm,"standard deviation of the standard length of the fish that make up the sample, in cm"
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anisakid_data.csv,Length_SE_cm,"standard error of the standard length of the fish that make up the sample, in cm"
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anisakid_data.csv,Length_min_cm,"minimum standard length of the fish that make up the sample, in cm"
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anisakid_data.csv,Length_max_cm,"maximum standard length of the fish that make up the sample, in cm"
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anisakid_data.csv,Length_median_cm,"median standard length of the fish that make up the sample, in cm"
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anisakid_data.csv,Length_PAL_cm,"mean preanal length of the fish that make up the sample, in cm"
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anisakid_data.csv,Length_SL_cm,"mean standard length of the fish that make up the sample, in cm"
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anisakid_data.csv,Length_SL_SE_cm,"standard error of the standard length of the fish that make up the sample, in cm"
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anisakid_data.csv,Length_SL_min_cm,"minimum standard length of the fish that make up the sample, in cm"
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anisakid_data.csv,Length_SL_max_cm,"maximum standard length of the fish that make up the sample, in cm"
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anisakid_data.csv,Length_TL_cm,"mean total length of the fish or invertebrates that make up the sample, in cm"
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anisakid_data.csv,Length_TL_cm_SE,"standard error of the total length of the fish or invertebrates that make up the sample, in cm"
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anisakid_data.csv,Length_TL_cm_SD,"standard deviation of the total length of the fish or invertebrates that make up the sample, in cm"
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anisakid_data.csv,Length_TL_cm_min,"minimum total length of the fish or invertebrates that make up the sample, in cm"
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anisakid_data.csv,Length_TL_cm_max,"maximum total length of the fish or invertebrates that make up the sample, in cm"
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anisakid_data.csv,Length_FL_cm_mean,"mean fork length of the fish that make up the sample, in cm"
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anisakid_data.csv,Length_FL_cm_SE,"standard error of the fork length of the fish that make up the sample, in cm"
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anisakid_data.csv,Length_FL_SD,"standard deviation of the fork length of the fish that make up the sample, in cm"
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anisakid_data.csv,Length_FL_cm_min,"minimum fork length of the fish that make up the sample, in cm"
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anisakid_data.csv,Length_FL_cm_max,"maximum fork length of the fish that make up the sample, in cm"
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anisakid_data.csv,Length_Dorsal_Mantle_cm,"mean length of the mantle on the dorsal side for the invertebrates that make up the sample, in cm"
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anisakid_data.csv,Length_Dorsal_Mantle_SE_cm,"standard error of the length of the mantle on the dorsal side for the invertebrates that make up the sample, in cm"
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anisakid_data.csv,Length_Dorsal_Mantle_Range_Min_cm,"minimum length of the mantle on the dorsal side for the invertebrates that make up the sample, in cm"
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anisakid_data.csv,Length_Dorsal_Mantle_Range_Max_cm,"maximum length of the mantle on the dorsal side for the invertebrates that make up the sample, in cm"
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anisakid_data.csv,Weight_kg,"mean mass of the fish or invertebrates that make up the sample, in kg"
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anisakid_data.csv,Weight_SE_kg,"standard error of the mass of the fish or invertebrates that make up the sample, in kg"
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anisakid_data.csv,Weight_SD_kg,"standard deviation of the mass of the fish or invertebrates that make up the sample, in kg"
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anisakid_data.csv,Weight_Min_kg,"minimum mass of the fish or invertebrates that make up the sample, in kg"
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anisakid_data.csv,Weight_Max_kg,"maximum mass of the fish or invertebrates that make up the sample, in kg"
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anisakid_data.csv,Age_mean_yrs,"mean age of the fish or invertebrates that make up the sample, in years"
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anisakid_data.csv,Age_SE_yrs,"standard error of the age of the fish or invertebrates that make up the sample, in years"
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anisakid_data.csv,Age_Min,"minimum age of the fish or invertebrates that make up the sample, in years"
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anisakid_data.csv,Age_Max,"maximum age of the fish or invertebrates that make up the sample, in years"
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anisakid_data.csv,Wild_Farmed,whether the fish or invertebrates in the sample were obtained from wild populations or aquaculture operations
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anisakid_data.csv,Host,Latin name of the host species
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anisakid_data.csv,Parasite,Latin name of the parasite species
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anisakid_data.csv,Total_Fish_Examined,total number of fish or invertebrates that make up the sample
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anisakid_data.csv,Implicit,"if we inferred the absence (i.e., abundance = 0) of a particular parasite, a 1 will appear in this column"
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anisakid_data.csv,Prevalence,proportion of the fish or invertebrates included in the sample sample that were infected with the parasite
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anisakid_data.csv,Intensity_Mean,the mean number of worms among infected host individuals
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anisakid_data.csv,Intensity_SE,the standard error for the number of worms among infected host individuals
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anisakid_data.csv,Intensity_SD,the standard deviation for the number of worms among infected host individuals
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anisakid_data.csv,Intensity_ConfidenceLevel95_Min,the lower bound of the 95% confidence interval around the number of worms among infected host individuals
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anisakid_data.csv,Intensity_ConfidenceLevel95_Max,the upper bound of the 95% confidence interval around the number of worms among infected host individuals
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anisakid_data.csv,Intensity_Range_Low,the lower bound of the range of number of worms among infected host individuals
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anisakid_data.csv,Intensity_Range_High,the upper bound of the range of number of worms among infected host individuals
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anisakid_data.csv,Abundance_mean_per_fish,the mean number of worms among all host individuals (not just infected hosts)
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anisakid_data.csv,Abundance_SE,the standard error for the number of worms among all host individuals (not just infected hosts)
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anisakid_data.csv,Abundance_SD,the standard deviation for the number of worms among all host individuals (not just infected hosts)
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anisakid_data.csv,Abundance_Variance,the variance for the number of worms among all host individuals (not just infected hosts)
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anisakid_data.csv,Abundance_ConfidenceLevel95_Min,the lower bound of the range of number of worms among all host individuals (not just infected hosts)
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anisakid_data.csv,Abundance_ConfidenceLevel95_Max,the upper bound of the range of number of worms among all host individuals (not just infected hosts)
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anisakid_data.csv,Abundance_Range_Min,the lower bound of the range of number of worms among all host individuals (not just infected hosts)
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anisakid_data.csv,Abundance_Range_Max,the upper bound of the range of number of worms among all host individuals (not just infected hosts)
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anisakid_data.csv,Total_Number_of_Parasites,total number of parasites across all fish or invertebrates in the sample
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anisakid_data.csv,Percent_in_Flesh,"percentage of the total number of worms that were found in musculature instead of body cavity, alimentary tract, etc."
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anisakid_data.csv,Use_Data,final judgment about whether the study should be included based on whether sufficient information could be extracted from the study
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anisakid_data.csv,Exclusion_Reason,reason for excluding the study
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anisakid_data.csv,Person_collecting_data,"the co-author who extracted data from the study (EF = Evan Fiorenza, KD = Katie Dobkowski, CW = Catrin Wendt)"
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anisakid_data.csv,Title,title of study (from Web of Science)
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anisakid_data.csv,Authors_List,authors of study (from Web of Science)
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anisakid_data.csv,CA,group authors of study (from Web of Science)
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anisakid_data.csv,GP,book group authors of study (from Web of Science)
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anisakid_data.csv,Publication_Type,publication type (J = journal; B = book; S = series; P = patent; from Web of Science)
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anisakid_data.csv,SO,publication name (from Web of Science)
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anisakid_data.csv,VL,publication volume number (from Web of Science)
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anisakid_data.csv,IS,publication issue number (from Web of Science)
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anisakid_data.csv,SI,special issue number (from Web of Science)
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anisakid_data.csv,MA,meeting abstract (from Web of Science)
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anisakid_data.csv,BP,beginning page of study (from Web of Science)
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anisakid_data.csv,EP,ending page of study (from Web of Science)
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anisakid_data.csv,AR,article number (from Web of Science)
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anisakid_data.csv,Year,year of publication (from Web of Science)
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anisakid_data.csv,CT,conference title (from Web of Science)
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anisakid_data.csv,CY,conference date (from Web of Science)
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anisakid_data.csv,SP,conference sponsors (from Web of Science)
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anisakid_data.csv,CL,conference location (from Web of Science)
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anisakid_fao.csv,ID,unique ID for each study retrieved from Web of Science
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anisakid_fao.csv,Latitude_dd,latitude of collection site in decimal degrees
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anisakid_fao.csv,Longitude_dd,longitude of collection site in decimal degrees
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anisakid_fao.csv,F_CODE,FAO Major Fishing Area in which collection site occurs
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anisakid_fao.csv,OCEAN,ocean in which collection site occurs
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anisakid_fao.csv,SUBOCEAN,FAO code for sub-ocean in which collection site occurs
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host_metadata.csv,DataSpecies,Latin names for host species as written in the dataset (note that this includes some misspellings; anisakid_data.csv)
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host_metadata.csv,Scientific,correct Latin names for host species from Fish Base
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host_metadata.csv,Fish,whether the host species is a fish (=1) or invertebrate (=0)
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processed_data_anisakis.csv,TrueHost,Latin name of the host species
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processed_data_anisakis.csv,Method_Counting_parasites,"the method that this study used to count Anisakis spp. worms (candling, microscopy, digestion, UV, or a combination of these)"
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processed_data_anisakis.csv,Total_Fish_Examined,total number of fish or invertebrates that make up the sample
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processed_data_anisakis.csv,Latitude_decimaldegrees,latitude of collection site in decimal degrees
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processed_data_anisakis.csv,Longitude_decimaldegrees,longitude of collection site in decimal degrees
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processed_data_anisakis.csv,Standard_Year,"year of collection, or the median year if a range of years were reported"
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processed_data_anisakis.csv,Standard_LengthCalc,"standard length for fishes (if other lengths were reported in the study, they have been converted to standard length using known relationships from FishBase) or dorsal mantle length for invertebrates"
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processed_data_anisakis.csv,Portion_of_Body,"the portion of the fish or invertebrates body that was examined for Anisakis spp. worms (alimentary tract, fillet, viscera, whole animal)"
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processed_data_anisakis.csv,ID,unique ID for each study retrieved from Web of Science
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processed_data_anisakis.csv,Wild_Farmed,whether the fish or invertebrates in the sample were obtained from wild populations or aquaculture operations
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processed_data_anisakis.csv,Standard_Abundance,reported mean abundance of Anisakis spp. worms OR prevalence of Anisakis spp. worms multiplied by intensity
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processed_data_anisakis.csv,V2,variance of the reported abundance of Anisakis spp. worms OR prevalence of Anisakis spp. worms multiplied by intensity
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processed_data_anisakis.csv,Standard_StandardDev,standard deviation of the reported abundance of Anisakis spp. worms OR prevalence of Anisakis spp. worms multiplied by intensity
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processed_data_anisakis.csv,FAO,FAO Major Fishing Area in which collection site occurs
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processed_data_pseudoterranova.csv,TrueHost,Latin name of the host species
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processed_data_pseudoterranova.csv,Method_Counting_parasites,"the method that this study used to count Pseudoterranova spp. worms (candling, microscopy, digestion, UV, or a combination of these)"
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processed_data_pseudoterranova.csv,Total_Fish_Examined,total number of fish or invertebrates that make up the sample
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processed_data_pseudoterranova.csv,Latitude_decimaldegrees,latitude of collection site in decimal degrees
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processed_data_pseudoterranova.csv,Longitude_decimaldegrees,longitude of collection site in decimal degrees
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processed_data_pseudoterranova.csv,Standard_Year,"year of collection, or the median year if a range of years were reported"
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processed_data_pseudoterranova.csv,Standard_LengthCalc,"standard length for fishes (if other lengths were reported in the study, they have been converted to standard length using known relationships from FishBase) or dorsal mantle length for invertebrates"
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processed_data_pseudoterranova.csv,Portion_of_Body,"the portion of the fish or invertebrates body that was examined for Pseudoterranova spp. worms (alimentary tract, fillet, viscera, whole animal)"
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processed_data_pseudoterranova.csv,ID,unique ID for each study retrieved from Web of Science
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processed_data_pseudoterranova.csv,Wild_Farmed,whether the fish or invertebrates in the sample were obtained from wild populations or aquaculture operations
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processed_data_pseudoterranova.csv,Standard_Abundance,reported mean abundance of Pseudoterranova spp. worms OR prevalence of Pseudoterranova spp. worms multiplied by intensity
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processed_data_pseudoterranova.csv,V2,variance of the reported abundance of Pseudoterranova spp. worms OR prevalence of Pseudoterranova spp. worms multiplied by intensity
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processed_data_pseudoterranova.csv,Standard_StandardDev,standard deviation of the reported abundance of Pseudoterranova spp. worms OR prevalence of Pseudoterranova spp. worms multiplied by intensity
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processed_data_pseudoterranova.csv,FAO,FAO Major Fishing Area in which collection site occurs |